myRT

myRT report for GCA_012031025.1_ASM1203102v1

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Seq: JAAUUP010000054.1 Deltaproteobacteria bacterium isolate SM2_4_1 NODE_3146_length_7001_cov_33.201629, whole genome shotgun sequence (7001 bp)
Overview 1 RT 1: 4799-6289 bp Neighborhood of RT #1 [4799, 6993] RVT-CRISPR-like Feature: gene Location: 4799-5335 bp Feature: gene Location: 5492-5668 bp Feature: gene Location: 5725-6993 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5875-6289 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5875-6289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JAAUUP010000058.1 Deltaproteobacteria bacterium isolate SM2_4_1 NODE_3246_length_6823_cov_7.680556, whole genome shotgun sequence (6823 bp)
Overview 1 RT 1: 727-4093 bp Neighborhood of RT #1 [727, 4093] RVT-GII GIIM Feature: gene Location: 727-984 bp Feature: gene Location: 1213-1428 bp Feature: gene Location: 1463-2746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2 360 bp Feature: domain Description: GIIM Note: maturase Location: 2447-2645 bp Feature: domain Description: GIIM Note: maturase Location: 2 447-2 645 bp Feature: gene Location: 3126-3533 bp Feature: gene Location: 3575-4093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAUUP010000100.1 Deltaproteobacteria bacterium isolate SM2_4_1 NODE_4070_length_5739_cov_9.290093, whole genome shotgun sequence (5739 bp)
Overview 1 RT 1: 2204-5738 bp Neighborhood of RT #1 [2204, 5738] PKcGMP_CC PKcGMP_CC DDE_Tnp_IS66 RVT-Retrons Feature: gene Location: 2204-3676 bp Feature: domain Description: PKcGMP_CC Location: 2219-2252 bp Feature: domain Description: PKcGMP_CC Location: 2219-2252 bp Feature: domain Description: PKcGMP_CC Location: 2291-2375 bp Feature: domain Description: PKcGMP_CC Location: 2291-23 75 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2738-3536 bp Feature: domain Description: DDE_Tnp_IS66 Location: 273 8-3 53 6 bp Feature: gene Location: 3687-4085 bp Feature: gene Location: 4190-5281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4319-4982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43 19-4982 bp Feature: gene Location: 5388-5738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKcGMP_CC (pfam16808), DDE_Tnp_IS66 (pfam03050), RVT-Retrons

Seq: JAAUUP010000127.1 Deltaproteobacteria bacterium isolate SM2_4_1 NODE_4567_length_5221_cov_1.956812, whole genome shotgun sequence (5221 bp)
Overview 1 RT 1: 422-5038 bp Neighborhood of RT #1 [422, 5038] RNase_H_Dikarya_like RVT-GII Feature: gene Location: 422-1378 bp Feature: gene Location: 1492-3798 bp Feature: domain Description: RNase_H_Dikarya_like Location: 1693-2116 bp Feature: domain Description: RNase_H_Dikarya_like Location: 1693-2116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2941-3403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 1-34 03 bp Feature: gene Location: 3942-4835 bp Feature: gene Location: 4847-5038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_H_Dikarya_like (cd13934), RVT-GII

Seq: JAAUUP010000156.1 Deltaproteobacteria bacterium isolate SM2_4_1 NODE_5027_length_4808_cov_5.091220, whole genome shotgun sequence (4808 bp)
Overview 1 RT 1: 154-4050 bp Neighborhood of RT #1 [154, 4050] LRR_4 LRR_4 RVT-Retrons MPP_1 Feature: gene Location: 154-534 bp Feature: domain Description: LRR_4 Location: 220-343 bp Feature: domain Description: LRR_4 Location: 220-343 bp Feature: domain Description: LRR_4 Location: 355-433 bp Feature: domain Description: LRR_4 Location: 35 5 -433 bp Feature: gene Location: 1106-2953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1235-1817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1235 -1817 bp Feature: domain Description: MPP_1 Location: 2168-2894 bp Feature: domain Description: MPP_1 Location: 2168-2894 bp Feature: gene Location: 3026-3715 bp Feature: gene Location: 3868-4050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_4 (pfam12799), RVT-Retrons, MPP_1 (cd07400)