myRT

myRT report for GCA_012031245.1_ASM1203124v1

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Seq: JAAUUA010000041.1 Saprospiraceae bacterium isolate SM2_1_10 NODE_3485_length_6449_cov_1.241379, whole genome shotgun sequence (6449 bp)
Overview 1 RT 1: 2866-6095 bp Neighborhood of RT #1 [2866, 6095] DUF4397 RVT-CRISPR-like RT_nLTR_like Feature: gene Location: 2866-3498 bp Feature: domain Description: DUF4397 Location: 2935-3286 bp Feature: domain Description: DUF4397 Location: 2935-3286 bp Feature: gene Location: 3800-4309 bp Feature: gene Location: 4320-4982 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4353-4782 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4353-4782 bp Feature: gene Location: 5009-5698 bp Feature: domain Description: RT_nLTR_like Location: 5501-5636 bp Feature: domain Description: RT_nLTR_like Location: 5501 -5636 bp Feature: gene Location: 5706-6095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4397 (pfam14344), RVT-CRISPR, RT_nLTR_like (cd01650)

Seq: JAAUUA010000343.1 Saprospiraceae bacterium isolate SM2_1_10 NODE_7725_length_3418_cov_2.758736, whole genome shotgun sequence (3418 bp)
Overview 1 RT 1: 3-2883 bp Neighborhood of RT #1 [3, 2969] Esterase DEXHc_SMARCA1_SMARCA5 RVT-GII GIIM Feature: gene Location: 3-137 bp Feature: gene Location: 147-1346 bp Feature: domain Description: Esterase Location: 252-699 bp Feature: domain Description: Esterase Location: 2 52 -699 bp Feature: domain Description: DEXHc_SMARCA1_SMARCA5 Location: 723-1044 bp Feature: domain Description: DEXHc_SMARCA1_SMARCA5 Location: 72 3-1044 bp Feature: gene Location: 1470-2969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1935-2592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1935-2 592 bp Feature: domain Description: GIIM Note: maturase Location: 2691-2883 bp Feature: domain Description: GIIM Note: maturase Location: 2 691-2 883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Esterase (pfam00756), DEXHc_SMARCA1_SMARCA5 (cd17997), RVT-GII, GIIM (pfam08388)

Seq: JAAUUA010000389.1 Saprospiraceae bacterium isolate SM2_1_10 NODE_8154_length_3265_cov_1.837476, whole genome shotgun sequence (3265 bp)
Overview 1 RT 1: 3-2657 bp Neighborhood of RT #1 [3, 3262] TM_helix Nth RVT-GII Feature: gene Location: 3-155 bp Feature: domain Description: TM_helix Location: 39-147 bp Feature: domain Description: TM_helix Location: 3 9-147 bp Feature: gene Location: 313-951 bp Feature: domain Description: Nth Location: 322-916 bp Feature: domain Description: Nth Location: 3 22-916 bp Feature: gene Location: 1685-3262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2069-2657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2069-2657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TM_helix (pfam05552), Nth (COG0177), RVT-GII