myRT

myRT report for GCA_012031285.1_ASM1203128v1

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Seq: JAAUTW010000397.1 Calothrix sp. SM1_7_51 NODE_10421_length_4094_cov_1.897404, whole genome shotgun sequence (4094 bp)
Overview 1 RT 1: 1354-3685 bp Neighborhood of RT #1 [1354, 3891] YfmG Avd_like RVT-DGRs Feature: gene Location: 1354-1986 bp Feature: domain Description: YfmG Location: 1357-1963 bp Feature: domain Description: YfmG Location: 1 357-1 963 bp Feature: gene Location: 2388-2756 bp Feature: domain Description: Avd_like Location: 2421-2736 bp Feature: domain Description: Avd_like Location: 2421 -2736 bp Feature: gene Location: 2818-3891 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3046-3685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3046-3685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAUTW010000563.1 Calothrix sp. SM1_7_51 NODE_12645_length_3537_cov_1.687977, whole genome shotgun sequence (3537 bp)
Overview 1 RT 1: 986-3197 bp Neighborhood of RT #1 [986, 3259] RVT-DGRs Avd_like Feature: gene Location: 986-1411 bp Feature: gene Location: 1525-1911 bp Feature: gene Location: 2111-2917 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2309-2906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 309-2 906 bp Feature: gene Location: 2924-3259 bp Feature: domain Description: Avd_like Location: 2930-3197 bp Feature: domain Description: Avd_like Location: 2 930-3197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: JAAUTW010000006.1 Calothrix sp. SM1_7_51 NODE_2008_length_12820_cov_2.322698, whole genome shotgun sequence (12820 bp)
Overview 1 RT 1: 2887-8586 bp Neighborhood of RT #1 [2887, 8639] 7WD40 KOG1273 7WD40 WD40 RVT-GII Intron_maturas2 HNHc recomb_XerC INT_tnpA_C_Tn554 XerC Feature: gene Location: 2887-4194 bp Feature: domain Description: 7WD40 Location: 2917-3595 bp Feature: domain Description: 7WD40 Location: 2917-3 595 bp Feature: domain Description: KOG1273 Location: 3637-3817 bp Feature: domain Description: KOG1273 Location: 3 63 7-3 817 bp Feature: domain Description: 7WD40 Location: 3823-4177 bp Feature: domain Description: 7WD40 Location: 3 823 -4177 bp Feature: gene Location: 4191-4865 bp Feature: domain Description: WD40 Location: 4344-4830 bp Feature: domain Description: WD40 Location: 43 44-483 0 bp Feature: gene Location: 5135-6010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5141-5252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5141-5252 bp Feature: domain Description: Intron_maturas2 Location: 5357-5594 bp Feature: domain Description: Intron_maturas2 Location: 53 57-5594 bp Feature: domain Description: HNHc Note: nucleases Location: 5753-5942 bp Feature: domain Description: HNHc Note: nucleases Location: 5753 -5942 bp Feature: gene Location: 6729-7829 bp Feature: domain Description: recomb_XerC Location: 6822-7005 bp Feature: domain Description: recomb_XerC Location: 6822-7005 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 7239-7788 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 723 9-7788 bp Feature: gene Location: 7830-8639 bp Feature: domain Description: XerC Location: 8112-8586 bp Feature: domain Description: XerC Location: 8112-8586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 7WD40 (sd00039), KOG1273 (KOG1273, WD40 repeat protein ), WD40 (smart00320), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), recomb_XerC (TIGR02224), INT_tnpA_C_Tn554 (cd01186), XerC (COG4973)