myRT

myRT report for GCA_012031415.1_ASM1203141v1

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Seq: JAAUTN010000149.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_1436_length_15627_cov_3.661097, whole genome shotgun sequence (15627 bp)
Overview 1 RT 1: 5663-10911 bp Neighborhood of RT #1 [5663, 11444] SnoaL_2 RVT-GII RVT-GII GIIM McrA RVT_N DUF3854 PriA PriA Feature: gene Location: 5663-5959 bp Feature: domain Description: SnoaL_2 Location: 5693-5915 bp Feature: domain Description: SnoaL_2 Location: 5693-591 5 bp Feature: gene Location: 6228-6746 bp Feature: gene Location: 7101-8012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7107-7266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 07-7266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7266-7431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7266-7431 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7647 bp Feature: domain Description: GIIM Note: maturase Location: 7488-7647 bp Feature: domain Description: McrA Location: 7707-7986 bp Feature: domain Description: McrA Location: 7707-7986 bp Feature: gene Location: 8246-8608 bp Feature: domain Description: RVT_N Location: 8282-8522 bp Feature: domain Description: RVT_N Location: 8282-8522 bp Feature: gene Location: 9141-11444 bp Feature: domain Description: DUF3854 Location: 9648-10029 bp Feature: domain Description: DUF3854 Location: 9648-1 0029 bp Feature: domain Description: PriA Location: 10176-10332 bp Feature: domain Description: PriA Location: 1 01 76-1 0332 bp Feature: domain Description: PriA Location: 10797-10911 bp Feature: domain Description: PriA Location: 1 0797-1 091 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_2 (pfam12680), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), DUF3854 (pfam12965), PriA (COG1198)

Seq: JAAUTN010000156.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_1510_length_15197_cov_8.336828, whole genome shotgun sequence (15197 bp)
Overview 1 RT 1: 41-3329 bp Neighborhood of RT #1 [41, 3961] RVT-CRISPR Cas_Cas1 Uma2 HTH_XRE AAA_16 Feature: gene Location: 41-1780 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 419-1025 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 419-102 5 bp Feature: domain Description: Cas_Cas1 Location: 1220-1751 bp Feature: domain Description: Cas_Cas1 Location: 12 2 0-1751 bp Feature: gene Location: 1840-2424 bp Feature: domain Description: Uma2 Location: 1876-2398 bp Feature: domain Description: Uma2 Location: 1876-2 398 bp Feature: gene Location: 2531-3961 bp Feature: domain Description: HTH_XRE Location: 2609-2726 bp Feature: domain Description: HTH_XRE Location: 2 609-2 72 6 bp Feature: domain Description: AAA_16 Location: 2819-3329 bp Feature: domain Description: AAA_16 Location: 2 819-332 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Uma2 (pfam05685), HTH_XRE (smart00530), AAA_16 (pfam13191)

Seq: JAAUTN010000170.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_1758_length_14021_cov_3.405355, whole genome shotgun sequence (14021 bp)
Overview 1 RT 1: 11438-14018 bp Neighborhood of RT #1 [11438, 14018] HicB COG2402 RVT-GII GIIM group_II_RT_mat Feature: gene Location: 11438-11722 bp Feature: domain Description: HicB Location: 11441-11561 bp Feature: domain Description: HicB Location: 11441-11561 bp Feature: gene Location: 11733-12122 bp Feature: domain Description: COG2402 Location: 11736-12117 bp Feature: domain Description: COG2402 Location: 1173 6-12117 bp Feature: gene Location: 12212-13270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12215-12806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12215-12806 bp Feature: domain Description: GIIM Note: maturase Location: 12848-13052 bp Feature: domain Description: GIIM Note: maturase Location: 12848-13 052 bp Feature: gene Location: 13246-13575 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13357-13444 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13 3 57-13 444 bp Feature: gene Location: 13821-14018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), COG2402 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: JAAUTN010000181.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_1864_length_13448_cov_3.263419, whole genome shotgun sequence (13448 bp)
Overview 1 RT 1: 8634-12951 bp Neighborhood of RT #1 [8634, 12951] Ppx-GppA RVT-GII GIIM HNHc Feature: gene Location: 8634-10001 bp Feature: domain Description: Ppx-GppA Location: 9147-9588 bp Feature: domain Description: Ppx-GppA Location: 914 7-9588 bp Feature: gene Location: 10392-10688 bp Feature: gene Location: 10732-12129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11071-11692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11071-11692 bp Feature: domain Description: GIIM Note: maturase Location: 11737-11941 bp Feature: domain Description: GIIM Note: maturase Location: 11737-1194 1 bp Feature: gene Location: 12258-12710 bp Feature: domain Description: HNHc Note: nucleases Location: 12273-12438 bp Feature: domain Description: HNHc Note: nucleases Location: 12273-124 38 bp Feature: gene Location: 12697-12951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ppx-GppA (pfam02541), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAUTN010000244.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_2586_length_11007_cov_6.259467, whole genome shotgun sequence (11007 bp)
Overview 1 RT 1: 7313-10962 bp Neighborhood of RT #1 [7313, 10982] YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 7313-8161 bp Feature: domain Description: YfmG Location: 7370-8141 bp Feature: domain Description: YfmG Location: 7370-8141 bp Feature: gene Location: 8346-8690 bp Feature: domain Description: Avd_like Location: 8364-8670 bp Feature: domain Description: Avd_like Location: 8364-8670 bp Feature: gene Location: 8687-9799 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8897-9536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8897-95 36 bp Feature: gene Location: 9807-10106 bp Feature: gene Location: 10167-10982 bp Feature: domain Description: YfmG Location: 10212-10962 bp Feature: domain Description: YfmG Location: 10212-10962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAUTN010000370.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_5254_length_6699_cov_2.460743, whole genome shotgun sequence (6699 bp)
Overview 1 RT 1: 845-4443 bp Neighborhood of RT #1 [845, 4443] PIN_VapC4-5_FitB-like RVT-Retrons MazF Feature: gene Location: 845-1060 bp Feature: gene Location: 1057-1485 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1069-1474 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 106 9-1474 bp Feature: gene Location: 1624-3147 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1675-2185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16 75-2185 bp Feature: gene Location: 3924-4277 bp Feature: domain Description: MazF Location: 3930-4239 bp Feature: domain Description: MazF Location: 3930-4239 bp Feature: gene Location: 4258-4443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC4-5_FitB-like (cd18754), RVT-Retrons, MazF (COG2337)

Seq: JAAUTN010000516.1 Leptolyngbyaceae cyanobacterium SM1_4_3 NODE_9832_length_4281_cov_2.614829, whole genome shotgun sequence (4281 bp)
Overview 1 RT 1: 2038-4280 bp Neighborhood of RT #1 [2038, 4280] TPR TPR RVT-Retrons Feature: gene Location: 2038-2661 bp Feature: domain Description: TPR Location: 2122-2374 bp Feature: domain Description: TPR Location: 2122-237 4 bp Feature: domain Description: TPR Location: 2398-2644 bp Feature: domain Description: TPR Location: 2398-2644 bp Feature: gene Location: 2738-2920 bp Feature: gene Location: 2929-4014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3106-3712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3106-37 12 bp Feature: gene Location: 4068-4280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-Retrons