myRT

myRT report for GCA_012031515.1_ASM1203151v1

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Seq: JAAUTC010000205.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_10226_length_4157_cov_1.687841, whole genome shotgun sequence (4157 bp)
Overview 1 RT 1: 1-3966 bp Neighborhood of RT #1 [1, 4154] PLN02820 PLN02820 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 zf-IS66 Feature: gene Location: 1-609 bp Feature: domain Description: PLN02820 Location: 4-574 bp Feature: domain Description: PLN02820 Location: 4-574 bp Feature: gene Location: 609-884 bp Feature: domain Description: PLN02820 Location: 612-882 bp Feature: domain Description: PLN02820 Location: 61 2-882 bp Feature: gene Location: 1073-2377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 328-1 997 bp Feature: gene Location: 2718-3362 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2721-3180 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2721 -31 80 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3201-3315 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3201 -331 5 bp Feature: gene Location: 3621-4154 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3648-3813 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3648-381 3 bp Feature: domain Description: zf-IS66 Location: 3840-3966 bp Feature: domain Description: zf-IS66 Location: 3840-3966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02820 (3-methylcrotonyl-CoA carboxylase, beta chain), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)

Seq: JAAUTC010000214.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_10276_length_4143_cov_3.528635, whole genome shotgun sequence (4143 bp)
Overview 1 RT 1: 2328-3931 bp Neighborhood of RT #1 [2328, 4089] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 2328-2603 bp Feature: domain Description: Cas2_I_II_III Location: 2340-2565 bp Feature: domain Description: Cas2 _I_II_III Location: 2 340-2 565 bp Feature: gene Location: 2587-3585 bp Feature: domain Description: Cas1_I-II-III Location: 2599-3547 bp Feature: domain Description: Cas1_I-II-III Location: 2 599-3547 bp Feature: gene Location: 3613-4089 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3664-3931 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3664-3931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR

Seq: JAAUTC010000327.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_11897_length_3703_cov_1.807327, whole genome shotgun sequence (3703 bp)
Overview 1 RT 1: 2-2596 bp Neighborhood of RT #1 [2, 2596] RVT-GII GIIM Feature: gene Location: 2-193 bp Feature: gene Location: 343-1425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424-1081 bp Feature: domain Description: GIIM Note: maturase Location: 1153-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1153 -13 60 bp Feature: gene Location: 1467-1886 bp Feature: gene Location: 2348-2596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAUTC010000016.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_1284_length_16537_cov_3.165570, whole genome shotgun sequence (16537 bp)
Overview 1 RT 1: 7691-12523 bp Neighborhood of RT #1 [7691, 12523] COG2842 COG2842 IS285 RVT-GII Feature: gene Location: 7691-8533 bp Feature: domain Description: COG2842 Location: 7721-7826 bp Feature: domain Description: COG284 2 Location: 7721-7826 bp Feature: domain Description: COG2842 Location: 8066-8426 bp Feature: domain Description: COG284 2 Location: 8066-84 26 bp Feature: gene Location: 8809-10044 bp Feature: domain Description: IS285 Location: 8869-10039 bp Feature: domain Description: IS285 Location: 8869-10039 bp Feature: gene Location: 10156-11475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10435-11107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 35-11107 bp Feature: gene Location: 11883-12119 bp Feature: gene Location: 12293-12523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2842 (Bacteriophage DNA transposition protein, AAA+ family ATPase ), IS285 (COG3328), RVT-GII

Seq: JAAUTC010000503.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_14118_length_3253_cov_3.301983, whole genome shotgun sequence (3253 bp)
Overview 1 RT 1: 1-2359 bp Neighborhood of RT #1 [1, 2359] IS285 RVT-GII GIIM Feature: gene Location: 1-669 bp Feature: domain Description: IS285 Location: 7-595 bp Feature: domain Description: IS285 Location: 7-5 95 bp Feature: gene Location: 874-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075 -15 88 bp Feature: gene Location: 1662-2108 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2031 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2031 bp Feature: gene Location: 2222-2359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388)

Seq: JAAUTC010000032.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_3058_length_9850_cov_2.088142, whole genome shotgun sequence (9850 bp)
Overview 1 RT 1: 3-4385 bp Neighborhood of RT #1 [3, 4954] R1-I-EN RVT-CRISPR-like Integrase_H2C2 rve Feature: gene Location: 3-557 bp Feature: gene Location: 582-2978 bp Feature: domain Description: R1-I-EN Location: 642-1275 bp Feature: domain Description: R1-I-EN Location: 6 42-1275 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2205-2742 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2205-2742 bp Feature: gene Location: 3157-3501 bp Feature: gene Location: 3815-4954 bp Feature: domain Description: Integrase_H2C2 Location: 3872-4031 bp Feature: domain Description: Integrase_H2C2 Location: 3872-4031 bp Feature: domain Description: rve Location: 4115-4385 bp Feature: domain Description: rve Location: 4115-4385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-CRISPR, Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: JAAUTC010000094.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_7160_length_5405_cov_1.880068, whole genome shotgun sequence (5405 bp)
Overview 1 RT 1: 2-3029 bp Neighborhood of RT #1 [2, 3052] RVT_N RVT-GII GIIM PinE Feature: gene Location: 2-196 bp Feature: gene Location: 487-1959 bp Feature: domain Description: RVT_N Location: 541-787 bp Feature: domain Description: RVT_N Location: 541-7 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1444 bp Feature: domain Description: GIIM Note: maturase Location: 1495-1729 bp Feature: domain Description: GIIM Note: maturase Location: 1495-17 29 bp Feature: gene Location: 1956-2291 bp Feature: gene Location: 2645-3052 bp Feature: domain Description: PinE Location: 2651-3029 bp Feature: domain Description: PinE Location: 2651-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: JAAUTC010000120.1 Candidatus Competibacteraceae bacterium isolate SM1_2_1 NODE_7906_length_5043_cov_5.403784, whole genome shotgun sequence (5043 bp)
Overview 1 RT 1: 866-4366 bp Neighborhood of RT #1 [866, 4410] rve_2 RVT-GII GIIM PHA02517 Feature: gene Location: 866-1528 bp Feature: gene Location: 1732-1947 bp Feature: domain Description: rve_2 Location: 1768-1921 bp Feature: domain Description: rve_2 Location: 1768 -1921 bp Feature: gene Location: 1986-3257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-2853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-28 53 bp Feature: domain Description: GIIM Note: maturase Location: 2940-3147 bp Feature: domain Description: GIIM Note: maturase Location: 2940-3147 bp Feature: gene Location: 3299-3757 bp Feature: gene Location: 3823-4410 bp Feature: domain Description: PHA02517 Location: 3829-4366 bp Feature: domain Description: PHA02517 Location: 38 29-4366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)