myRT

myRT report for GCA_012031535.1_ASM1203153v1

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Seq: JAAUTI010000735.1 Microcoleus sp. SM1_3_4 NODE_12152_length_3647_cov_1.775852, whole genome shotgun sequence (3647 bp)
Overview 1 RT 1: 3-3392 bp Neighborhood of RT #1 [3, 3418] Avd_like RVT-DGRs YjgR HAS-barrel Feature: gene Location: 3-236 bp Feature: gene Location: 279-575 bp Feature: domain Description: Avd_like Location: 285-552 bp Feature: domain Description: Avd_like Location: 285-552 bp Feature: gene Location: 594-1640 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 804-1443 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 804-1 443 bp Feature: gene Location: 1675-3276 bp Feature: domain Description: YjgR Location: 1738-3184 bp Feature: domain Description: YjgR Location: 1 738-31 84 bp Feature: gene Location: 3266-3418 bp Feature: domain Description: HAS-barrel Location: 3284-3392 bp Feature: domain Description: HAS-barrel Location: 3284-3392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjgR (COG0433), Avd_like (cd16376), HAS-barrel (pfam09378), RVT-DGRs

Seq: JAAUTI010000275.1 Microcoleus sp. SM1_3_4 NODE_4268_length_7776_cov_1.749771, whole genome shotgun sequence (7776 bp)
Overview 1 RT 1: 3292-6474 bp Neighborhood of RT #1 [3292, 6485] CE4_NodB_like_5s_6s RVT-Retrons Rnc Feature: gene Location: 3292-3993 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 3664-3976 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 3664-3976 bp Feature: gene Location: 4055-4228 bp Feature: gene Location: 4310-5482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4655-5273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4655-52 73 bp Feature: gene Location: 5472-5684 bp Feature: gene Location: 5802-6485 bp Feature: domain Description: Rnc Location: 5820-6474 bp Feature: domain Description: Rnc Location: 582 0-6474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_NodB_like_5s_6s (cd10918), RVT-Retrons, Rnc (COG0571)

Seq: JAAUTI010000297.1 Microcoleus sp. SM1_3_4 NODE_4606_length_7405_cov_2.622699, whole genome shotgun sequence (7405 bp)
Overview 1 RT 1: 1937-5606 bp Neighborhood of RT #1 [1937, 5692] HdrB HNHc RVT_N RVT-GII GIIM InsQ Feature: gene Location: 1937-2506 bp Feature: domain Description: HdrB Location: 1952-2501 bp Feature: domain Description: HdrB Location: 1952-2501 bp Feature: gene Location: 2793-2987 bp Feature: domain Description: HNHc Note: nucleases Location: 2805-2901 bp Feature: domain Description: HNHc Note: nucleases Location: 2805-2901 bp Feature: gene Location: 3074-4432 bp Feature: RT Description: RVT_N Location: 3110-3356 bp Feature: RT Description: RVT_N Location: 3 110-3 3 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407-4064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 407-4064 bp Feature: domain Description: GIIM Note: maturase Location: 4121-4319 bp Feature: domain Description: GIIM Note: maturase Location: 4121-43 19 bp Feature: gene Location: 4643-4885 bp Feature: gene Location: 4949-5692 bp Feature: domain Description: InsQ Location: 4994-5606 bp Feature: domain Description: InsQ Location: 4994-5606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HdrB (COG2048), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: JAAUTI010000557.1 Microcoleus sp. SM1_3_4 NODE_8459_length_4783_cov_1.670103, whole genome shotgun sequence (4783 bp)
Overview 1 RT 1: 136-2879 bp Neighborhood of RT #1 [136, 2879] HNHc RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 136-576 bp Feature: domain Description: HNHc Note: nucleases Location: 406-541 bp Feature: domain Description: HNHc Note: nucleases Location: 4 06-54 1 bp Feature: gene Location: 456-1241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 86-84 3 bp Feature: domain Description: GIIM Note: maturase Location: 942-1155 bp Feature: domain Description: GIIM Note: maturase Location: 94 2-1155 bp Feature: gene Location: 1287-1865 bp Feature: RT Description: RVT_N Location: 1323-1569 bp Feature: RT Description: RVT_N Location: 1323-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1611-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1611-1836 bp Feature: gene Location: 2243-2383 bp Feature: gene Location: 2583-2879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HNHc (smart00507), GIIM (pfam08388)