myRT

myRT report for GCA_012031555.1_ASM1203155v1

Download annotations/find similar RTs

Seq: JAAUUQ010000102.1 Bacterium isolate SM2_5_0 NODE_2854_length_7527_cov_2.159865, whole genome shotgun sequence (7527 bp)
Overview 1 RT 1: 992-5704 bp Neighborhood of RT #1 [992, 5712] TIR_2 NACHT COG5635 pfam03781 RVT-DGRs RVT-DGRs Avd_like Feature: gene Location: 992-1579 bp Feature: domain Description: TIR_2 Location: 1007-1373 bp Feature: domain Description: TIR_2 Location: 1 007-1 373 bp Feature: gene Location: 1615-4194 bp Feature: domain Description: NACHT Location: 1984-2524 bp Feature: domain Description: NACHT Location: 1 984-2524 bp Feature: domain Description: COG5635 Location: 2962-3052 bp Feature: domain Description: COG5635 Location: 2962-3052 bp Feature: domain Description: pfam03781 Location: 3550-4180 bp Feature: domain Description: pfam03781 Location: 3550-41 80 bp Feature: gene Location: 4310-4849 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4529-4739 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4529-4739 bp Feature: gene Location: 4810-5046 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4825-5002 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4825-5002 bp Feature: gene Location: 5090-5374 bp Feature: gene Location: 5416-5712 bp Feature: domain Description: Avd_like Location: 5422-5704 bp Feature: domain Description: Avd_like Location: 5422-5704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), NACHT (pfam05729), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376)

Seq: JAAUUQ010000123.1 Bacterium isolate SM2_5_0 NODE_3196_length_6905_cov_3.628947, whole genome shotgun sequence (6905 bp)
Overview 1 RT 1: 1381-5903 bp Neighborhood of RT #1 [1381, 6283] DUF262 RVT-GII GIIM HNHc PinE Zn_ribbon_recom Feature: gene Location: 1381-1821 bp Feature: gene Location: 1856-2539 bp Feature: domain Description: DUF262 Location: 1991-2444 bp Feature: domain Description: DUF2 62 Location: 1991-2 444 bp Feature: gene Location: 2916-4226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2937-3546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 937-3546 bp Feature: domain Description: GIIM Note: maturase Location: 3621-3852 bp Feature: domain Description: GIIM Note: maturase Location: 362 1-3852 bp Feature: domain Description: HNHc Note: nucleases Location: 3990-4221 bp Feature: domain Description: HNHc Note: nucleases Location: 3990-42 2 1 bp Feature: gene Location: 4334-4525 bp Feature: gene Location: 4730-6283 bp Feature: domain Description: PinE Location: 4766-5402 bp Feature: domain Description: PinE Location: 4766-5402 bp Feature: domain Description: Zn_ribbon_recom Location: 5726-5903 bp Feature: domain Description: Zn_ribbon_recom Location: 572 6-5903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: JAAUUQ010000157.1 Bacterium isolate SM2_5_0 NODE_3670_length_6223_cov_3.239993, whole genome shotgun sequence (6223 bp)
Overview 1 RT 1: 851-5236 bp Neighborhood of RT #1 [851, 5236] RVT-UNC GIY-YIG_PLEs Feature: gene Location: 851-1420 bp Feature: gene Location: 1424-1771 bp Feature: gene Location: 2016-3818 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2427-2844 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2427-2844 bp Feature: domain Description: GIY-YIG_PLEs Location: 3540-3810 bp Feature: domain Description: GIY-YIG_PLEs Location: 3 540-3 810 bp Feature: gene Location: 4623-4913 bp Feature: gene Location: 5102-5236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG25/RVT-CRISPR(RVT-UNC), GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000197.1 Bacterium isolate SM2_5_0 NODE_4176_length_5617_cov_12.108379, whole genome shotgun sequence (5617 bp)
Overview 1 RT 1: 2-4276 bp Neighborhood of RT #1 [2, 4276] RVT-UNC Feature: gene Location: 2-457 bp Feature: gene Location: 1106-1282 bp Feature: gene Location: 1464-3932 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2499-3075 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24 99-3075 bp Feature: gene Location: 3929-4276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: JAAUUQ010000221.1 Bacterium isolate SM2_5_0 NODE_4375_length_5424_cov_2.921465, whole genome shotgun sequence (5424 bp)
Overview 1 RT 1: 1604-4821 bp Neighborhood of RT #1 [1604, 5423] RVT-UNC Feature: gene Location: 1604-1786 bp Feature: gene Location: 1882-3456 bp Feature: gene Location: 3525-5423 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4356-4821 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 435 6-4821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-GII/RVT-UG3/RVT-UG10(RVT-UNC)

Seq: JAAUUQ010000223.1 Bacterium isolate SM2_5_0 NODE_4402_length_5383_cov_15.114536, whole genome shotgun sequence (5383 bp)
Overview 1 RT 1: 1-4704 bp Neighborhood of RT #1 [1, 4724] L1-EN RVT-UNC BCAT_beta_family Feature: gene Location: 1-234 bp Feature: gene Location: 247-555 bp Feature: gene Location: 675-3836 bp Feature: domain Description: L1-EN Location: 951-1458 bp Feature: domain Description: L1-EN Location: 951-1458 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2496-3120 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2496 -3120 bp Feature: gene Location: 3904-4107 bp Feature: gene Location: 4455-4724 bp Feature: domain Description: BCAT_beta_family Location: 4458-4704 bp Feature: domain Description: BCAT_beta_family Location: 4458-4704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC), BCAT_beta_family (cd01557)

Seq: JAAUUQ010000239.1 Bacterium isolate SM2_5_0 NODE_4605_length_5172_cov_20.615461, whole genome shotgun sequence (5172 bp)
Overview 1 RT 1: 3-2291 bp Neighborhood of RT #1 [3, 2291] RVT-UG10 GIY-YIG_PLEs Feature: gene Location: 3-1226 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 54-270 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 54-27 0 bp Feature: domain Description: GIY-YIG_PLEs Location: 930-1203 bp Feature: domain Description: GIY-YIG_PLEs Location: 930-1203 bp Feature: gene Location: 1395-1655 bp Feature: gene Location: 2076-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10, GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000249.1 Bacterium isolate SM2_5_0 NODE_4679_length_5100_cov_9.738991, whole genome shotgun sequence (5100 bp)
Overview 1 RT 1: 1-4196 bp Neighborhood of RT #1 [1, 4196] RVT-UNC GIY-YIG_PLEs Feature: gene Location: 1-1944 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 385-829 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 38 5-8 29 bp Feature: domain Description: GIY-YIG_PLEs Location: 1519-1786 bp Feature: domain Description: GIY-YIG_PLEs Location: 1519-178 6 bp Feature: gene Location: 2430-4196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG26/RVT-UG25/RVT-UG3(RVT-UNC), GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000255.1 Bacterium isolate SM2_5_0 NODE_4736_length_5036_cov_3.223875, whole genome shotgun sequence (5036 bp)
Overview 1 RT 1: 1123-4944 bp Neighborhood of RT #1 [1123, 4979] PHA02517 HTH_Tnp_1 RVT-UG19 InsE Feature: gene Location: 1123-1998 bp Feature: domain Description: PHA02517 Location: 1189-1972 bp Feature: domain Description: PHA02517 Location: 1189 -19 72 bp Feature: gene Location: 1995-2291 bp Feature: domain Description: HTH_Tnp_1 Location: 1998-2220 bp Feature: domain Description: HTH_Tnp_1 Location: 19 9 8-2220 bp Feature: gene Location: 2399-3649 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2492-2969 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 249 2-29 69 bp Feature: gene Location: 3655-4407 bp Feature: gene Location: 4656-4979 bp Feature: domain Description: InsE Location: 4665-4944 bp Feature: domain Description: InsE Location: 4665-49 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), RVT-UG19, InsE (COG2963)

Seq: JAAUUQ010000267.1 Bacterium isolate SM2_5_0 NODE_4856_length_4945_cov_7.484018, whole genome shotgun sequence (4945 bp)
Overview 1 RT 1: 109-4235 bp Neighborhood of RT #1 [109, 4235] RVT-DGRs GIY-YIG_PLEs Feature: gene Location: 109-2397 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 931-1366 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 931-1366 bp Feature: domain Description: GIY-YIG_PLEs Location: 2062-2329 bp Feature: domain Description: GIY-YIG_PLEs Location: 2062-2329 bp Feature: gene Location: 2442-4235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000281.1 Bacterium isolate SM2_5_0 NODE_4984_length_4840_cov_4.528750, whole genome shotgun sequence (4840 bp)
Overview 1 RT 1: 1116-4759 bp Neighborhood of RT #1 [1116, 4759] RVT-UNC Feature: gene Location: 1116-1253 bp Feature: gene Location: 1374-1550 bp Feature: gene Location: 1837-3459 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2827-3415 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2827-3415 bp Feature: gene Location: 3461-4759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JAAUUQ010000285.1 Bacterium isolate SM2_5_0 NODE_5048_length_4791_cov_27.290309, whole genome shotgun sequence (4791 bp)
Overview 1 RT 1: 72-4077 bp Neighborhood of RT #1 [72, 4790] GldJ_short L1-EN RVT-UNC Feature: gene Location: 72-662 bp Feature: domain Description: GldJ_short Location: 123-645 bp Feature: domain Description: GldJ_short Location: 12 3-645 bp Feature: gene Location: 836-1015 bp Feature: gene Location: 1668-4790 bp Feature: domain Description: L1-EN Location: 1908-2412 bp Feature: domain Description: L1-EN Location: 1908-2412 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3444-4077 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3444-4077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GldJ_short (TIGR03530), L1-EN (cd09076), RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: JAAUUQ010000293.1 Bacterium isolate SM2_5_0 NODE_5133_length_4721_cov_8.618198, whole genome shotgun sequence (4721 bp)
Overview 1 RT 1: 2-4376 bp Neighborhood of RT #1 [2, 4376] RVT-UNC GIY-YIG_PLEs Feature: gene Location: 2-1537 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 68-368 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 68-368 bp Feature: domain Description: GIY-YIG_PLEs Location: 1052-1319 bp Feature: domain Description: GIY-YIG_PLEs Location: 1052-13 19 bp Feature: gene Location: 1555-2115 bp Feature: gene Location: 2484-4376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG26/RVT-UG3/RVT-CRISPR(RVT-UNC), GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000301.1 Bacterium isolate SM2_5_0 NODE_5188_length_4686_cov_1.927396, whole genome shotgun sequence (4686 bp)
Overview 1 RT 1: 1109-3661 bp Neighborhood of RT #1 [1109, 4440] group_II_RT_mat RVT-UG19 Feature: gene Location: 1109-1861 bp Feature: gene Location: 2149-2784 bp Feature: gene Location: 2803-4440 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2854-3109 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2854-3109 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3184-3661 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 3184-3661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG19

Seq: JAAUUQ010000353.1 Bacterium isolate SM2_5_0 NODE_5726_length_4345_cov_4.045282, whole genome shotgun sequence (4345 bp)
Overview 1 RT 1: 459-4314 bp Neighborhood of RT #1 [459, 4314] DDE_Tnp_ISAZ013 RVT_N RVT-GII GIIM McrA Feature: gene Location: 459-896 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 477-840 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 477-840 bp Feature: gene Location: 1120-1530 bp Feature: gene Location: 1906-3654 bp Feature: domain Description: RVT_N Location: 1981-2227 bp Feature: domain Description: RVT_N Location: 1981-2227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2269-2947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2269-2947 bp Feature: domain Description: GIIM Note: maturase Location: 3049-3283 bp Feature: domain Description: GIIM Note: maturase Location: 3049-3283 bp Feature: domain Description: McrA Location: 3373-3643 bp Feature: domain Description: McrA Location: 3373-3643 bp Feature: gene Location: 3994-4314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAUUQ010000386.1 Bacterium isolate SM2_5_0 NODE_6123_length_4122_cov_3.086358, whole genome shotgun sequence (4122 bp)
Overview 1 RT 1: 268-3877 bp Neighborhood of RT #1 [268, 3900] RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 268-453 bp Feature: gene Location: 542-673 bp Feature: gene Location: 1015-1740 bp Feature: domain Description: RVT_N Location: 1051-1294 bp Feature: domain Description: RVT_N Location: 1051-1294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1339-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1339-1714 bp Feature: gene Location: 1935-2195 bp Feature: gene Location: 2324-3106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2606-3053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2606-3053 bp Feature: gene Location: 3382-3900 bp Feature: domain Description: GIIM Note: maturase Location: 3391-3508 bp Feature: domain Description: GIIM Note: maturase Location: 3391-3508 bp Feature: domain Description: HNHc Note: nucleases Location: 3712-3877 bp Feature: domain Description: HNHc Note: nucleases Location: 3712-3877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAUUQ010000433.1 Bacterium isolate SM2_5_0 NODE_6520_length_3927_cov_2.190789, whole genome shotgun sequence (3927 bp)
Overview 1 RT 1: 2-3925 bp Neighborhood of RT #1 [2, 3925] CpxP RVT-GII McrA InsQ Feature: gene Location: 2-136 bp Feature: domain Description: CpxP Location: 11-125 bp Feature: domain Description: CpxP Location: 11-125 bp Feature: gene Location: 287-1603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-1025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-1025 bp Feature: domain Description: McrA Location: 1259-1586 bp Feature: domain Description: McrA Location: 1259-1586 bp Feature: gene Location: 2475-3692 bp Feature: domain Description: InsQ Location: 2490-3609 bp Feature: domain Description: InsQ Location: 2490-3609 bp Feature: gene Location: 3740-3925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpxP (COG3678), RVT-GII, McrA (COG4058), InsQ (COG0675)

Seq: JAAUUQ010000443.1 Bacterium isolate SM2_5_0 NODE_6548_length_3912_cov_9.454690, whole genome shotgun sequence (3912 bp)
Overview 1 RT 1: 81-3910 bp Neighborhood of RT #1 [81, 3910] RVT-UNC GIY-YIG_PLEs Feature: gene Location: 81-2297 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 855-1284 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 855-1284 bp Feature: domain Description: GIY-YIG_PLEs Location: 2010-2277 bp Feature: domain Description: GIY-YIG_PLEs Location: 2010-2277 bp Feature: gene Location: 2381-3910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG26/RVT-UG19/RVT-GII(RVT-UNC), GIY-YIG_PLEs (cd10442)

Seq: JAAUUQ010000459.1 Bacterium isolate SM2_5_0 NODE_6652_length_3859_cov_4.267149, whole genome shotgun sequence (3859 bp)
Overview 1 RT 1: 187-3856 bp Neighborhood of RT #1 [187, 3856] RVT_N RVT-GII YkfC HNH ParM_like Feature: gene Location: 187-369 bp Feature: gene Location: 595-753 bp Feature: gene Location: 861-2684 bp Feature: domain Description: RVT_N Location: 1035-1278 bp Feature: domain Description: RVT_N Location: 1035-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323-19 71 bp Feature: domain Description: YkfC Location: 2103-2325 bp Feature: domain Description: YkfC Location: 2103-2325 bp Feature: domain Description: HNH Note: nucleases Location: 2493-2631 bp Feature: domain Description: HNH Note: nucleases Location: 2493-2631 bp Feature: gene Location: 2690-3403 bp Feature: domain Description: ParM_like Location: 2765-3371 bp Feature: domain Description: ParM_like Location: 2765-3371 bp Feature: gene Location: 3473-3856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), ParM_like (cd10227)

Seq: JAAUUQ010000602.1 Bacterium isolate SM2_5_0 NODE_7768_length_3402_cov_97.260763, whole genome shotgun sequence (3402 bp)
Overview 1 RT 1: 3-2601 bp Neighborhood of RT #1 [3, 3290] L1-EN RVT-UNC Feature: gene Location: 3-143 bp Feature: gene Location: 300-3290 bp Feature: domain Description: L1-EN Location: 498-1128 bp Feature: domain Description: L1-EN Location: 498-1128 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1965-2601 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1965-2601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-AbiA/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: JAAUUQ010000611.1 Bacterium isolate SM2_5_0 NODE_7820_length_3385_cov_1.706875, whole genome shotgun sequence (3385 bp)
Overview 1 RT 1: 3-3365 bp Neighborhood of RT #1 [3, 3382] argH RVT-AbiP2 MviM Feature: gene Location: 3-200 bp Feature: domain Description: argH Location: 12-186 bp Feature: domain Description: argH Location: 12-186 bp Feature: gene Location: 756-1142 bp Feature: gene Location: 1236-2204 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1611-2061 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1611-2061 bp Feature: gene Location: 2690-3382 bp Feature: domain Description: MviM Location: 2696-3365 bp Feature: domain Description: MviM Location: 2696-3365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argH (TIGR00838), RVT-AbiP2, MviM (COG0673)