myRT

myRT report for GCA_012031665.1_ASM1203166v1

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Seq: JAAUUF010000161.1 Richelia sp. SM2_1_7 NODE_2026_length_9717_cov_3.265798, whole genome shotgun sequence (9717 bp)
Overview 1 RT 1: 5991-9373 bp Neighborhood of RT #1 [5991, 9417] WD40 WD40 KOG0266 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5991-6740 bp Feature: domain Description: WD40 Location: 6021-6498 bp Feature: domain Description: WD40 Location: 6021 -6498 bp Feature: domain Description: WD40 Location: 6567-6681 bp Feature: domain Description: WD40 Location: 6567-6681 bp Feature: gene Location: 6891-7268 bp Feature: domain Description: KOG0266 Location: 6909-7128 bp Feature: domain Description: KOG0266 Location: 6909-71 28 bp Feature: gene Location: 7633-9417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7894-8689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7894-8689 bp Feature: domain Description: Intron_maturas2 Location: 8794-9025 bp Feature: domain Description: Intron_maturas2 Location: 8794-9025 bp Feature: domain Description: HNHc Note: nucleases Location: 9214-9373 bp Feature: domain Description: HNHc Note: nucleases Location: 921 4-9373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAUUF010000163.1 Richelia sp. SM2_1_7 NODE_2037_length_9678_cov_3.099466, whole genome shotgun sequence (9678 bp)
Overview 1 RT 1: 4108-9624 bp Neighborhood of RT #1 [4108, 9638] Y1_Tnp RVT_N RVT-GII RVT_N RVT-GII GIIM HNH RVT-GII GIIM HNHc HNH_5 Feature: gene Location: 4108-4641 bp Feature: domain Description: Y1_Tnp Location: 4279-4630 bp Feature: domain Description: Y1_Tnp Location: 42 79-4630 bp Feature: gene Location: 4726-4932 bp Feature: gene Location: 5168-5656 bp Feature: domain Description: RVT_N Location: 5204-5441 bp Feature: domain Description: RVT_N Location: 52 04-5441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-5639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-5639 bp Feature: gene Location: 6227-7975 bp Feature: domain Description: RVT_N Location: 6287-6533 bp Feature: domain Description: RVT_N Location: 62 87-6533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6575-7259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6575-72 59 bp Feature: domain Description: GIIM Note: maturase Location: 7358-7592 bp Feature: domain Description: GIIM Note: maturase Location: 7358-7592 bp Feature: domain Description: HNH Note: nucleases Location: 7817-7949 bp Feature: domain Description: HNH Note: nucleases Location: 7817-7949 bp Feature: gene Location: 8117-9412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8159-8705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8159-8705 bp Feature: domain Description: GIIM Note: maturase Location: 8762-8990 bp Feature: domain Description: GIIM Note: maturase Location: 8762 -8990 bp Feature: domain Description: HNHc Note: nucleases Location: 9230-9371 bp Feature: domain Description: HNHc Note: nucleases Location: 92 30-9371 bp Feature: gene Location: 9495-9638 bp Feature: domain Description: HNH_5 Location: 9510-9624 bp Feature: domain Description: HNH_5 Location: 9510-962 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507), HNH_5 (pfam14279)

Seq: JAAUUF010000504.1 Richelia sp. SM2_1_7 NODE_4683_length_5096_cov_2.286979, whole genome shotgun sequence (5096 bp)
Overview 1 RT 1: 110-1494 bp Neighborhood of RT #1 [110, 1494] RVT_N RVT-GII Feature: gene Location: 110-610 bp Feature: domain Description: RVT_N Location: 161-407 bp Feature: domain Description: RVT_N Location: 161-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455-593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455-593 bp Feature: gene Location: 880-1113 bp Feature: gene Location: 1255-1494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAUUF010000754.1 Richelia sp. SM2_1_7 NODE_7274_length_3584_cov_1.684119, whole genome shotgun sequence (3584 bp)
Overview 1 RT 1: 2346-3344 bp Neighborhood of RT #1 [2346, 3505] RVT-GII GIIM Feature: gene Location: 2346-2486 bp Feature: gene Location: 2492-2629 bp Feature: gene Location: 2942-3505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2945-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 5-3089 bp Feature: domain Description: GIIM Note: maturase Location: 3146-3344 bp Feature: domain Description: GIIM Note: maturase Location: 314 6-334 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAUUF010000780.1 Richelia sp. SM2_1_7 NODE_7682_length_3431_cov_0.654358, whole genome shotgun sequence (3431 bp)
Overview 1 RT 1: 2-2943 bp Neighborhood of RT #1 [2, 2943] RT_LTR RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 2-421 bp Feature: gene Location: 427-837 bp Feature: domain Description: RT_LTR Location: 535-835 bp Feature: domain Description: RT_LTR Location: 5 35 -835 bp Feature: gene Location: 877-1989 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 910-1033 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 910-1033 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1369-1711 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1369-1711 bp Feature: domain Description: Integrase_H2C2 Location: 1825-1981 bp Feature: domain Description: Integrase_H2C2 Location: 1825 -1981 bp Feature: gene Location: 2037-2681 bp Feature: domain Description: rve Location: 2043-2364 bp Feature: domain Description: rve Location: 2043-2364 bp Feature: gene Location: 2668-2943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_LTR (cd01647), RVT-UG20/RVT-UG26/RVT-UG7/RVT-UG3(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: JAAUUF010000801.1 Richelia sp. SM2_1_7 NODE_8074_length_3295_cov_1.999369, whole genome shotgun sequence (3295 bp)
Overview 1 RT 1: 3-3214 bp Neighborhood of RT #1 [3, 3294] Nterm_IS4 RVT-GII RVT-GII RVT-GII GIIM Feature: gene Location: 3-605 bp Feature: domain Description: Nterm_IS4 Location: 63-324 bp Feature: domain Description: Nterm_IS4 Location: 6 3-324 bp Feature: gene Location: 1634-1858 bp Feature: gene Location: 1967-2320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249-2315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249-2315 bp Feature: gene Location: 2324-2674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2330-2612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2330-26 12 bp Feature: gene Location: 2677-3294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2713-2932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2713-2932 bp Feature: domain Description: GIIM Note: maturase Location: 3001-3214 bp Feature: domain Description: GIIM Note: maturase Location: 3001-3214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nterm_IS4 (pfam13006), RVT-GII, GIIM (pfam08388)