myRT

myRT report for GCA_012031725.1_ASM1203172v1

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Seq: JAAUTR010000138.1 Methylacidiphilales bacterium isolate SM1_5_7 NODE_1082_length_18087_cov_3.255624, whole genome shotgun sequence (18087 bp)
Overview 1 RT 1: 6189-10838 bp Neighborhood of RT #1 [6189, 10846] STKc_PknB_like YfmG Avd_like RVT-DGRs Uma2 Feature: gene Location: 6189-8069 bp Feature: domain Description: STKc_PknB_like Location: 6219-6996 bp Feature: domain Description: STKc_PknB_like Location: 621 9-6996 bp Feature: domain Description: YfmG Location: 7266-8055 bp Feature: domain Description: YfmG Location: 7266-8055 bp Feature: gene Location: 8199-8543 bp Feature: domain Description: Avd_like Location: 8217-8523 bp Feature: domain Description: Avd_like Location: 821 7-8523 bp Feature: gene Location: 8692-9741 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8902-9544 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8902-9544 bp Feature: gene Location: 9928-10125 bp Feature: gene Location: 10268-10846 bp Feature: domain Description: Uma2 Location: 10286-10838 bp Feature: domain Description: Uma2 Location: 1 0286-1 0838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), STKc_PknB_like (cd14014), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAUTR010000155.1 Methylacidiphilales bacterium isolate SM1_5_7 NODE_1260_length_16723_cov_2.902085, whole genome shotgun sequence (16723 bp)
Overview 1 RT 1: 39-6504 bp Neighborhood of RT #1 [39, 7301] RVT-Retrons RVT-Retrons WGR_DNA_ligase HEAT_2 HEAT Feature: gene Location: 39-482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45-231 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45-2 31 bp Feature: gene Location: 623-1456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1169-1433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1169-1433 bp Feature: gene Location: 2219-3871 bp Feature: gene Location: 4038-7301 bp Feature: domain Description: WGR_DNA_ligase Location: 4056-4293 bp Feature: domain Description: WGR_DNA_ligase Location: 4056-42 93 bp Feature: domain Description: HEAT_2 Location: 4494-4692 bp Feature: domain Description: HEAT_2 Location: 4494-4692 bp Feature: domain Description: HEAT Location: 6108-6504 bp Feature: domain Description: HEAT Location: 6108-6504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), HEAT (sd00044)

Seq: JAAUTR010000019.1 Methylacidiphilales bacterium isolate SM1_5_7 NODE_133_length_41288_cov_10.002187, whole genome shotgun sequence (41288 bp)
Overview 1 RT 1: 7186-10617 bp Neighborhood of RT #1 [7186, 11000] DDE_Tnp_1_4 RVT-GII recD_rel recD_rel Feature: gene Location: 7186-8424 bp Feature: domain Description: DDE_Tnp_1_4 Location: 7189-8413 bp Feature: domain Description: DDE_Tnp_1_4 Location: 7189-8413 bp Feature: gene Location: 8496-8657 bp Feature: gene Location: 8711-9136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8759-9089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8759-9089 bp Feature: gene Location: 9365-9763 bp Feature: domain Description: recD_rel Location: 9371-9749 bp Feature: domain Description: recD_rel Location: 93 71-9749 bp Feature: gene Location: 9771-11000 bp Feature: domain Description: recD_rel Location: 9774-10617 bp Feature: domain Description: recD_rel Location: 9774-10617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, recD_rel (TIGR01448)

Seq: JAAUTR010000253.1 Methylacidiphilales bacterium isolate SM1_5_7 NODE_2519_length_11157_cov_3.022393, whole genome shotgun sequence (11157 bp)
Overview 1 RT 1: 7538-11001 bp Neighborhood of RT #1 [7538, 11001] KOG2679 KOG2679 RVT_N RVT-GII Feature: gene Location: 7538-9190 bp Feature: domain Description: KOG2679 Location: 7649-7970 bp Feature: domain Description: KOG2679 Location: 764 9-7970 bp Feature: domain Description: KOG2679 Location: 8744-8855 bp Feature: domain Description: KOG2679 Location: 874 4 -8855 bp Feature: gene Location: 9521-9658 bp Feature: gene Location: 9953-10495 bp Feature: RT Description: RVT_N Location: 9989-10229 bp Feature: RT Description: RVT_N Location: 9989-10229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10286-10460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10286-104 60 bp Feature: gene Location: 10570-10797 bp Feature: gene Location: 10804-11001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2679 (KOG2679, Purple (tartrate-resistant) acid phosphatase ), RVT_N (pfam13655), RVT-GII

Seq: JAAUTR010000326.1 Methylacidiphilales bacterium isolate SM1_5_7 NODE_4368_length_7666_cov_3.703940, whole genome shotgun sequence (7666 bp)
Overview 1 RT 1: 3098-6600 bp Neighborhood of RT #1 [3098, 6683] InsQ McrA RVT_N RVT-GII InsQ Feature: gene Location: 3098-4039 bp Feature: domain Description: InsQ Location: 3206-3980 bp Feature: domain Description: InsQ Location: 3206-3980 bp Feature: gene Location: 4041-4325 bp Feature: domain Description: McrA Location: 4047-4248 bp Feature: domain Description: McrA Location: 4047-4248 bp Feature: gene Location: 4679-5740 bp Feature: RT Description: RVT_N Location: 4712-4958 bp Feature: RT Description: RVT_N Location: 4712-495 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5000-5681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 000-5 681 bp Feature: gene Location: 5980-6135 bp Feature: gene Location: 6240-6683 bp Feature: domain Description: InsQ Location: 6243-6600 bp Feature: domain Description: InsQ Location: 6243-6600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), McrA (COG4058), RVT_N (pfam13655), RVT-GII