myRT

myRT report for GCA_012031965.1_ASM1203196v1

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Seq: JAAUSC010000013.1 Scytonema sp. RU_4_4 NODE_130_length_59214_cov_15.129944, whole genome shotgun sequence (59214 bp)
Overview 1 RT 1: 10900-18445 bp Neighborhood of RT #1 [10900, 18456] RNR_II_monomer RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM McrA RNR_II_monomer RTPR Feature: gene Location: 10900-11163 bp Feature: domain Description: RNR_II_monomer Location: 10963-11158 bp Feature: domain Description: RNR_II_monomer Location: 1 0963-1 1 1 58 bp Feature: gene Location: 11209-11337 bp Feature: gene Location: 11827-13620 bp Feature: domain Description: RVT_N Location: 11863-12109 bp Feature: domain Description: RVT_N Location: 1 1 863-1 21 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12151-12823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 51 -1 2823 bp Feature: domain Description: GIIM Note: maturase Location: 12922-13156 bp Feature: domain Description: GIIM Note: maturase Location: 1 2922-1 31 56 bp Feature: domain Description: McrA Location: 13234-13522 bp Feature: domain Description: McrA Location: 1 3234-1 3522 bp Feature: gene Location: 13671-13802 bp Feature: gene Location: 14407-16293 bp Feature: domain Description: RVT_N Location: 14449-14695 bp Feature: domain Description: RVT_N Location: 1 4449-1 4695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14737-15478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4737-1 5478 bp Feature: domain Description: GIIM Note: maturase Location: 15580-15814 bp Feature: domain Description: GIIM Note: maturase Location: 1 5580-1 581 4 bp Feature: domain Description: McrA Location: 15910-16183 bp Feature: domain Description: McrA Location: 1 591 0-1 61 83 bp Feature: gene Location: 16339-17160 bp Feature: domain Description: RNR_II_monomer Location: 16345-17155 bp Feature: domain Description: RNR_II_monomer Location: 1 6345-1 71 55 bp Feature: gene Location: 17548-18456 bp Feature: domain Description: RTPR Location: 17554-18445 bp Feature: domain Description: RTPR Location: 1 7554-1 8445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RTPR (TIGR02505)

Seq: JAAUSC010000370.1 Scytonema sp. RU_4_4 NODE_14723_length_3756_cov_1.618903, whole genome shotgun sequence (3756 bp)
Overview 1 RT 1: 3-3584 bp Neighborhood of RT #1 [3, 3610] MFS_ShiA_like RVT-GII GIIM DUF2461 Feature: gene Location: 3-641 bp Feature: domain Description: MFS_ShiA_like Location: 321-516 bp Feature: domain Description: MFS_ShiA_like Location: 32 1-516 bp Feature: gene Location: 902-2197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097-1712 bp Feature: domain Description: GIIM Note: maturase Location: 1784-1997 bp Feature: domain Description: GIIM Note: maturase Location: 1784-1997 bp Feature: gene Location: 2751-2888 bp Feature: gene Location: 2936-3610 bp Feature: domain Description: DUF2461 Location: 2954-3584 bp Feature: domain Description: DUF2 461 Location: 2 954-3584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ShiA_like (cd17369), RVT-GII, GIIM (pfam08388), DUF2461 (pfam09365)

Seq: JAAUSC010000376.1 Scytonema sp. RU_4_4 NODE_15266_length_3668_cov_1.596442, whole genome shotgun sequence (3668 bp)
Overview 1 RT 1: 547-2674 bp Neighborhood of RT #1 [547, 2793] RVT_N RVT-GII McrA DDE_3 Feature: gene Location: 547-864 bp Feature: domain Description: RVT_N Location: 583-820 bp Feature: domain Description: RVT_N Location: 583 -820 bp Feature: gene Location: 912-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1299 bp Feature: gene Location: 1646-2056 bp Feature: domain Description: McrA Location: 1751-2027 bp Feature: domain Description: McrA Location: 1751-2027 bp Feature: gene Location: 2098-2793 bp Feature: domain Description: DDE_3 Location: 2218-2674 bp Feature: domain Description: DDE_3 Location: 2218-2674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), DDE_3 (pfam13358)

Seq: JAAUSC010000037.1 Scytonema sp. RU_4_4 NODE_244_length_44688_cov_15.374341, whole genome shotgun sequence (44688 bp)
Overview 1 RT 1: 17099-19970 bp Neighborhood of RT #1 [17099, 19970] RVT-DGRs Feature: gene Location: 17099-17974 bp Feature: gene Location: 17995-18357 bp Feature: gene Location: 18296-19354 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18500-19148 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18500-1914 8 bp Feature: gene Location: 19380-19511 bp Feature: gene Location: 19806-19970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JAAUSC010000212.1 Scytonema sp. RU_4_4 NODE_2602_length_12311_cov_14.277413, whole genome shotgun sequence (12311 bp)
Overview 1 RT 1: 283-5032 bp Neighborhood of RT #1 [283, 5046] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR SpoT TIGR03985 Feature: gene Location: 283-558 bp Feature: domain Description: Cas2_I_II_III Location: 292-520 bp Feature: domain Description: Cas2_I_II_III Location: 292-5 20 bp Feature: gene Location: 559-1563 bp Feature: domain Description: Cas1_I-II-III Location: 571-1525 bp Feature: domain Description: Cas1_I-II-III Location: 5 71-15 25 bp Feature: gene Location: 1896-2876 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2103-2709 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2103-2709 bp Feature: gene Location: 2869-3468 bp Feature: domain Description: SpoT Location: 2887-3394 bp Feature: domain Description: SpoT Location: 2887-3394 bp Feature: gene Location: 3514-5046 bp Feature: domain Description: TIGR03985 Location: 4261-5032 bp Feature: domain Description: TIGR03985 Location: 4261-5 032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, SpoT (COG0317), TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: JAAUSC010000104.1 Scytonema sp. RU_4_4 NODE_798_length_24146_cov_13.143511, whole genome shotgun sequence (24146 bp)
Overview 1 RT 1: 3-8452 bp Neighborhood of RT #1 [3, 8452] DUF3670 DEXQc_arch_SWI2_SNF2 RVT_N RVT-GII GIIM McrA RVT_N RVT-GII McrA Feature: gene Location: 3-2072 bp Feature: domain Description: DUF3670 Location: 1227-1644 bp Feature: domain Description: DUF36 70 Location: 1227-16 44 bp Feature: domain Description: DEXQc_arch_SWI2_SNF2 Location: 1758-1911 bp Feature: domain Description: DEXQc_arch_SWI2_SNF2 Location: 1758-1911 bp Feature: gene Location: 2137-2400 bp Feature: gene Location: 2445-4334 bp Feature: domain Description: RVT_N Location: 2559-2805 bp Feature: domain Description: RVT_N Location: 2559-2805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847-3543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847-3543 bp Feature: domain Description: GIIM Note: maturase Location: 3630-3855 bp Feature: domain Description: GIIM Note: maturase Location: 36 30-3855 bp Feature: domain Description: McrA Location: 3942-4284 bp Feature: domain Description: McrA Location: 3942-4284 bp Feature: gene Location: 4360-4506 bp Feature: gene Location: 4526-4753 bp Feature: gene Location: 4921-5382 bp Feature: gene Location: 5319-6881 bp Feature: domain Description: RVT_N Location: 5355-5592 bp Feature: domain Description: RVT_N Location: 5355-5592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5652-6309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 52-6 309 bp Feature: domain Description: McrA Location: 6543-6864 bp Feature: domain Description: McrA Location: 6 543-6 86 4 bp Feature: gene Location: 6901-7365 bp Feature: gene Location: 7403-8452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3670 (pfam12419), DEXQc_arch_SWI2_SNF2 (cd18012), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAUSC010000119.1 Scytonema sp. RU_4_4 NODE_965_length_21604_cov_15.303860, whole genome shotgun sequence (21604 bp)
Overview 1 RT 1: 1-7750 bp Neighborhood of RT #1 [1, 7755] ddl RVT-GII GIIM HNHc InsQ TPR_12 TPR_12 TPR_12 TPR COG4995 Feature: gene Location: 1-1128 bp Feature: domain Description: ddl Location: 7-1090 bp Feature: domain Description: ddl Location: 7 -1090 bp Feature: gene Location: 1200-1952 bp Feature: gene Location: 2025-2981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2184-2277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2184-227 7 bp Feature: domain Description: GIIM Note: maturase Location: 2334-2562 bp Feature: domain Description: GIIM Note: maturase Location: 2334-2562 bp Feature: domain Description: HNHc Note: nucleases Location: 2787-2946 bp Feature: domain Description: HNHc Note: nucleases Location: 27 87 -2946 bp Feature: gene Location: 3621-4613 bp Feature: domain Description: InsQ Location: 3759-4452 bp Feature: domain Description: InsQ Location: 37 59-4452 bp Feature: gene Location: 4831-7755 bp Feature: domain Description: TPR_12 Location: 5056-5239 bp Feature: domain Description: TPR_12 Location: 5056-5239 bp Feature: domain Description: TPR_12 Location: 5281-5479 bp Feature: domain Description: TPR_12 Location: 5281-547 9 bp Feature: domain Description: TPR_12 Location: 5521-5695 bp Feature: domain Description: TPR_12 Location: 5521-5695 bp Feature: domain Description: TPR Location: 5896-6457 bp Feature: domain Description: TPR Location: 5896-6457 bp Feature: domain Description: COG4995 Location: 6478-7750 bp Feature: domain Description: COG4995 Location: 647 8-7 7 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ddl (PRK01966), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675), TPR_12 (pfam13424), TPR (smart00028), COG4995 (Uncharacterized conserved protein, contains CHAT domain )