myRT

myRT report for GCA_012031975.1_ASM1203197v1

Download annotations/find similar RTs

Seq: JAAUSA010000095.1 Alkalinema sp. RU_4_3 NODE_1443_length_17542_cov_3.786219, whole genome shotgun sequence (17542 bp)
Overview 1 RT 1: 9922-14110 bp Neighborhood of RT #1 [9922, 14142] YfmG Uma2 RVT-DGRs Avd_like YfmG Feature: gene Location: 9922-10197 bp Feature: domain Description: YfmG Location: 9943-10051 bp Feature: domain Description: YfmG Location: 9943-1 0051 bp Feature: gene Location: 10224-10877 bp Feature: domain Description: Uma2 Location: 10329-10755 bp Feature: domain Description: Uma2 Location: 1 0329-1 0755 bp Feature: gene Location: 10918-11964 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11131-11764 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 31 -1 1 764 bp Feature: gene Location: 11986-12321 bp Feature: domain Description: Avd_like Location: 12004-12310 bp Feature: domain Description: Avd_like Location: 1 2004-1 231 0 bp Feature: gene Location: 12433-14142 bp Feature: domain Description: YfmG Location: 13249-14110 bp Feature: domain Description: YfmG Location: 1 3249-1 41 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Uma2 (pfam05685), RVT-DGRs, Avd_like (cd16376)

Seq: JAAUSA010000007.1 Alkalinema sp. RU_4_3 NODE_165_length_54736_cov_3.872933, whole genome shotgun sequence (54736 bp)
Overview 1 RT 1: 45947-51554 bp Neighborhood of RT #1 [45947, 51643] CHAP RVT-GII GIIM HcaE Cupin_7 Feature: gene Location: 45947-46117 bp Feature: gene Location: 46334-47806 bp Feature: domain Description: CHAP Location: 47186-47372 bp Feature: domain Description: CHAP Location: 47186-47372 bp Feature: gene Location: 48644-50008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48923-49544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4892 3-49544 bp Feature: domain Description: GIIM Note: maturase Location: 49586-49790 bp Feature: domain Description: GIIM Note: maturase Location: 49586-49790 bp Feature: gene Location: 50107-51075 bp Feature: domain Description: HcaE Location: 50140-51004 bp Feature: domain Description: HcaE Location: 50140-51004 bp Feature: gene Location: 51296-51643 bp Feature: domain Description: Cupin_7 Location: 51353-51554 bp Feature: domain Description: Cupin_7 Location: 51353-51554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAP (pfam05257), RVT-GII, GIIM (pfam08388), HcaE (COG4638), Cupin_7 (pfam12973)

Seq: JAAUSA010000118.1 Alkalinema sp. RU_4_3 NODE_1777_length_15579_cov_3.586138, whole genome shotgun sequence (15579 bp)
Overview 1 RT 1: 11764-15474 bp Neighborhood of RT #1 [11764, 15515] DUF2887 RVT-CRISPR RVT-CRISPR Cas1_I-II-III Feature: gene Location: 11764-12387 bp Feature: gene Location: 12483-13265 bp Feature: domain Description: DUF2887 Location: 12492-13092 bp Feature: domain Description: DUF2887 Location: 12492-13 092 bp Feature: gene Location: 13354-13995 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13597-13957 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13 597-13 957 bp Feature: gene Location: 13976-14509 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13979-14192 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13 979-14192 bp Feature: gene Location: 14451-15515 bp Feature: domain Description: Cas1_I-II-III Location: 14511-15474 bp Feature: domain Description: Cas1_I-II-III Location: 14511-15474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2887 (pfam11103), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JAAUSA010000150.1 Alkalinema sp. RU_4_3 NODE_2469_length_12729_cov_3.755436, whole genome shotgun sequence (12729 bp)
Overview 1 RT 1: 8755-11692 bp Neighborhood of RT #1 [8755, 11692] DUF4058 RVT-GII Feature: gene Location: 8755-8946 bp Feature: domain Description: DUF4058 Location: 8758-8848 bp Feature: domain Description: DUF4 058 Location: 8758-884 8 bp Feature: gene Location: 9015-9182 bp Feature: gene Location: 9468-10418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9747-10083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974 7-10083 bp Feature: gene Location: 10513-10758 bp Feature: gene Location: 11084-11692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4058 (pfam13267), RVT-GII

Seq: JAAUSA010000158.1 Alkalinema sp. RU_4_3 NODE_2642_length_12220_cov_3.667163, whole genome shotgun sequence (12220 bp)
Overview 1 RT 1: 1273-4163 bp Neighborhood of RT #1 [1273, 4163] Avd_like RVT-DGRs YfmG Feature: gene Location: 1273-1635 bp Feature: domain Description: Avd_like Location: 1303-1609 bp Feature: domain Description: Avd_like Location: 1303-1609 bp Feature: gene Location: 1766-1984 bp Feature: gene Location: 1971-2765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1983-2562 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1983-25 62 bp Feature: gene Location: 3066-3911 bp Feature: domain Description: YfmG Location: 3117-3891 bp Feature: domain Description: YfmG Location: 3117-3891 bp Feature: gene Location: 3954-4163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YfmG (COG1262)