myRT

myRT report for GCA_012032115.1_ASM1203211v1

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Seq: JAAURT010000281.1 Anaerolineae bacterium isolate RU_4_12 NODE_10904_length_4574_cov_1.116933, whole genome shotgun sequence (4574 bp)
Overview 1 RT 1: 3-2674 bp Neighborhood of RT #1 [3, 2685] YfmG pfam03781 RVT-DGRs Avd_like Feature: gene Location: 3-281 bp Feature: domain Description: YfmG Location: 63-234 bp Feature: domain Description: YfmG Location: 63-234 bp Feature: gene Location: 329-1102 bp Feature: domain Description: pfam03781 Location: 377-1070 bp Feature: domain Description: pfam03781 Location: 377-1 070 bp Feature: gene Location: 1217-2035 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1295-1811 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 295-1 81 1 bp Feature: gene Location: 1951-2277 bp Feature: gene Location: 2290-2685 bp Feature: domain Description: Avd_like Location: 2362-2674 bp Feature: domain Description: Avd_like Location: 2362-2674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: JAAURT010000354.1 Anaerolineae bacterium isolate RU_4_12 NODE_12578_length_4161_cov_7.322757, whole genome shotgun sequence (4161 bp)
Overview 1 RT 1: 591-4008 bp Neighborhood of RT #1 [591, 4082] APH RVT_N RVT-GII GIIM HNH Feature: gene Location: 591-1628 bp Feature: domain Description: APH Location: 846-1446 bp Feature: domain Description: APH Location: 846-1446 bp Feature: gene Location: 2017-2316 bp Feature: gene Location: 2331-4082 bp Feature: RT Description: RVT_N Location: 2400-2640 bp Feature: RT Description: RVT_N Location: 2 400-2 640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2691-3336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 691-3336 bp Feature: domain Description: GIIM Note: maturase Location: 3390-3621 bp Feature: domain Description: GIIM Note: maturase Location: 3390-362 1 bp Feature: domain Description: HNH Note: nucleases Location: 3873-4008 bp Feature: domain Description: HNH Note: nucleases Location: 3873-4008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), APH (pfam01636)

Seq: JAAURT010000679.1 Anaerolineae bacterium isolate RU_4_12 NODE_20672_length_3003_cov_3.590751, whole genome shotgun sequence (3003 bp)
Overview 1 RT 1: 3-3001 bp Neighborhood of RT #1 [3, 3001] DUF4158 RVT-GII matK HNHc Feature: gene Location: 3-326 bp Feature: domain Description: DUF4158 Location: 15-288 bp Feature: domain Description: DUF4158 Location: 15-288 bp Feature: gene Location: 453-680 bp Feature: gene Location: 921-2732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203 -1995 bp Feature: domain Description: matK Location: 2139-2340 bp Feature: domain Description: matK Location: 213 9-23 40 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-2685 bp Feature: domain Description: HNHc Note: nucleases Location: 2490-2685 bp Feature: gene Location: 2759-3001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: JAAURT010000161.1 Anaerolineae bacterium isolate RU_4_12 NODE_8366_length_5506_cov_5.825246, whole genome shotgun sequence (5506 bp)
Overview 1 RT 1: 611-3247 bp Neighborhood of RT #1 [611, 3247] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 611-2524 bp Feature: RT Description: RVT_N Location: 896-1136 bp Feature: RT Description: RVT_N Location: 896-1136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2120 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2120 bp Feature: domain Description: HNHc Note: nucleases Location: 2345-2504 bp Feature: domain Description: HNHc Note: nucleases Location: 234 5-2504 bp Feature: gene Location: 2567-2725 bp Feature: gene Location: 2792-3247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)