myRT

myRT report for GCA_012032435.1_ASM1203243v1

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Seq: JAAUPL010000008.1 Aquincola sp. isolate CSU_5_57 NODE_2866_length_6353_cov_1.40267, whole genome shotgun sequence (6353 bp)
Overview 1 RT 1: 1258-6057 bp Neighborhood of RT #1 [1258, 6251] RVT-CRISPR-like AccA Feature: gene Location: 1258-1932 bp Feature: gene Location: 1971-2810 bp Feature: gene Location: 2827-4905 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2842-3235 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2842-3235 bp Feature: gene Location: 5616-6251 bp Feature: domain Description: AccA Location: 5940-6057 bp Feature: domain Description: AccA Location: 5940-6057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, AccA (COG0825)

Seq: JAAUPL010000048.1 Aquincola sp. isolate CSU_5_57 NODE_4687_length_4404_cov_5.21019, whole genome shotgun sequence (4404 bp)
Overview 1 RT 1: 645-4402 bp Neighborhood of RT #1 [645, 4402] AAA_21 DDE_Tnp_1 RVT-GII group_II_RT_mat Feature: gene Location: 645-914 bp Feature: domain Description: AAA_21 Location: 735-789 bp Feature: domain Description: AAA_2 1 Location: 735-789 bp Feature: gene Location: 862-2412 bp Feature: domain Description: DDE_Tnp_1 Location: 1687-2167 bp Feature: domain Description: DDE_Tnp_1 Location: 1687-2 167 bp Feature: gene Location: 2763-3782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2967-3579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 967-3579 bp Feature: gene Location: 3620-3991 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3626-3893 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 362 6-3893 bp Feature: gene Location: 4163-4402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), DDE_Tnp_1 (pfam01609), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JAAUPL010000066.1 Aquincola sp. isolate CSU_5_57 NODE_5112_length_4146_cov_3.67529, whole genome shotgun sequence (4146 bp)
Overview 1 RT 1: 289-2751 bp Neighborhood of RT #1 [289, 2751] RVT-GII Feature: gene Location: 289-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1516 bp Feature: gene Location: 2320-2547 bp Feature: gene Location: 2578-2751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAUPL010000068.1 Aquincola sp. isolate CSU_5_57 NODE_5198_length_4112_cov_1.52974, whole genome shotgun sequence (4112 bp)
Overview 1 RT 1: 1364-3740 bp Neighborhood of RT #1 [1364, 4111] INT_RitA_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII Feature: gene Location: 1364-1603 bp Feature: domain Description: INT_RitA_C_like Location: 1424-1580 bp Feature: domain Description: INT_RitA_C_like Location: 14 24 -1580 bp Feature: gene Location: 1637-2614 bp Feature: domain Description: Phage_int_SAM_4 Location: 2024-2261 bp Feature: domain Description: Phage_int_SAM_4 Location: 2024 -2261 bp Feature: domain Description: INT_RitA_C_like Location: 2336-2585 bp Feature: domain Description: INT_RitA_C_like Location: 2336-2585 bp Feature: gene Location: 2762-4111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3053-3740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3053-374 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), Phage_int_SAM_4 (pfam13495), RVT-GII

Seq: JAAUPL010000193.1 Aquincola sp. isolate CSU_5_57 NODE_8210_length_3105_cov_1.88818, whole genome shotgun sequence (3105 bp)
Overview 1 RT 1: 207-3103 bp Neighborhood of RT #1 [207, 3103] RVT-GII GIIM Feature: gene Location: 207-1550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 22-115 5 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1449 bp Feature: domain Description: GIIM Note: maturase Location: 1245 -1449 bp Feature: gene Location: 1706-1861 bp Feature: gene Location: 2336-3103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)