myRT

myRT report for GCA_012032515.1_ASM1203251v1

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Seq: JAAUSS010000272.1 Leptolyngbyaceae cyanobacterium SL_5_14 NODE_2933_length_5782_cov_3.894430, whole genome shotgun sequence (5782 bp)
Overview 1 RT 1: 2146-4965 bp Neighborhood of RT #1 [2146, 4965] MazF RVT-CRISPR-like Feature: gene Location: 2146-2331 bp Feature: gene Location: 2312-2665 bp Feature: domain Description: MazF Location: 2318-2627 bp Feature: domain Description: MazF Location: 231 8-2627 bp Feature: gene Location: 3218-3589 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3353-3494 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3353-3494 bp Feature: gene Location: 3717-3899 bp Feature: gene Location: 3976-4965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazF (COG2337), RVT-CRISPR

Seq: JAAUSS010000366.1 Leptolyngbyaceae cyanobacterium SL_5_14 NODE_4245_length_4092_cov_3.523834, whole genome shotgun sequence (4092 bp)
Overview 1 RT 1: 1943-3911 bp Neighborhood of RT #1 [1943, 3911] TPR TPR RVT-Retrons Feature: gene Location: 1943-2362 bp Feature: domain Description: TPR Location: 1952-2174 bp Feature: domain Description: TPR Location: 1952 -2 174 bp Feature: domain Description: TPR Location: 2195-2345 bp Feature: domain Description: TPR Location: 2 195-2 345 bp Feature: gene Location: 2439-2621 bp Feature: gene Location: 2630-3715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2807-3413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 807-3413 bp Feature: gene Location: 3747-3911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-Retrons

Seq: JAAUSS010000422.1 Leptolyngbyaceae cyanobacterium SL_5_14 NODE_5122_length_3452_cov_2.357594, whole genome shotgun sequence (3452 bp)
Overview 1 RT 1: 36-2979 bp Neighborhood of RT #1 [36, 2979] RVT_N RVT_N RVT-GII GIIM HNHc Feature: gene Location: 36-245 bp Feature: domain Description: RVT_N Location: 39-168 bp Feature: domain Description: RVT_N Location: 3 9-168 bp Feature: gene Location: 320-487 bp Feature: gene Location: 1035-2516 bp Feature: domain Description: RVT_N Location: 1038-1164 bp Feature: domain Description: RVT_N Location: 103 8-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1821 bp Feature: domain Description: GIIM Note: maturase Location: 1884-2106 bp Feature: domain Description: GIIM Note: maturase Location: 1884-2106 bp Feature: domain Description: HNHc Note: nucleases Location: 2334-2487 bp Feature: domain Description: HNHc Note: nucleases Location: 23 3 4-2487 bp Feature: gene Location: 2668-2979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)