myRT

myRT report for GCA_012032965.1_ASM1203296v1

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Seq: JAAUPT010000112.1 Nitrospira sp. isolate RL_2_10 NODE_3007_length_6240_cov_2.302634, whole genome shotgun sequence (6240 bp)
Overview 1 RT 1: 67-3551 bp Neighborhood of RT #1 [67, 3551] PHA02517 RVT-GII GIIM InsE HTH_Tnp_1 HTH_21 Feature: gene Location: 67-432 bp Feature: domain Description: PHA02517 Location: 70-421 bp Feature: domain Description: PHA0251 7 Location: 70-421 bp Feature: gene Location: 601-1842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799-1 456 bp Feature: domain Description: GIIM Note: maturase Location: 1534-1741 bp Feature: domain Description: GIIM Note: maturase Location: 1 534-1 741 bp Feature: gene Location: 2335-3051 bp Feature: domain Description: InsE Location: 2344-2605 bp Feature: domain Description: InsE Location: 2344-2605 bp Feature: domain Description: HTH_Tnp_1 Location: 2629-2731 bp Feature: domain Description: HTH_Tnp_1 Location: 2629-2731 bp Feature: domain Description: HTH_21 Location: 2755-2923 bp Feature: domain Description: HTH_21 Location: 2755-2923 bp Feature: gene Location: 3129-3551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276)

Seq: JAAUPT010000216.1 Nitrospira sp. isolate RL_2_10 NODE_6030_length_4522_cov_1.040046, whole genome shotgun sequence (4522 bp)
Overview 1 RT 1: 1909-4034 bp Neighborhood of RT #1 [1909, 4498] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Feature: gene Location: 1909-2391 bp Feature: domain Description: retropepsin_like Location: 2059-2311 bp Feature: domain Description: retropepsin_like Location: 2 059-2 311 bp Feature: gene Location: 2469-2891 bp Feature: gene Location: 2921-4498 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3125-3305 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 312 5-3305 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3686-4034 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3686-4034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG26/RVT-UG20/RVT-DGRs/RVT-UG11(RVT-UNC), RNase_HI_RT_Ty3 (cd09274)