myRT

myRT report for GCA_012033015.1_ASM1203301v1

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Seq: JAAUPS010000001.1 Phormidesmis sp. RL_2_1 NODE_13_length_71444_cov_2.767615, whole genome shotgun sequence (71444 bp)
Overview 1 RT 1: 54091-58539 bp Neighborhood of RT #1 [54091, 58539] TIR_2 YfmG Avd_like RVT-DGRs Feature: gene Location: 54091-55473 bp Feature: domain Description: TIR_2 Location: 54112-54454 bp Feature: domain Description: TIR_2 Location: 541 1 2-54454 bp Feature: domain Description: YfmG Location: 54703-55453 bp Feature: domain Description: YfmG Location: 54703-55453 bp Feature: gene Location: 55578-55946 bp Feature: domain Description: Avd_like Location: 55599-55905 bp Feature: domain Description: Avd_like Location: 55599-55905 bp Feature: gene Location: 55943-57025 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56153-56792 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 561 53-56792 bp Feature: gene Location: 57482-57880 bp Feature: gene Location: 57913-58539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAUPS010000296.1 Phormidesmis sp. RL_2_1 NODE_3323_length_5940_cov_2.585068, whole genome shotgun sequence (5940 bp)
Overview 1 RT 1: 1407-5939 bp Neighborhood of RT #1 [1407, 5939] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csx1_III-U Feature: gene Location: 1407-1607 bp Feature: gene Location: 1791-2066 bp Feature: domain Description: Cas2_I_II_III Location: 1800-2031 bp Feature: domain Description: Cas2 _I_II_III Location: 1800-2 031 bp Feature: gene Location: 2283-4469 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2523-3129 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 52 3-312 9 bp Feature: domain Description: Cas1_I-II-III Location: 3450-4434 bp Feature: domain Description: Cas1_I-II-III Location: 3450-4434 bp Feature: gene Location: 4551-5384 bp Feature: domain Description: Csx1_III-U Location: 4980-5298 bp Feature: domain Description: Csx1_III-U Location: 4980-52 98 bp Feature: gene Location: 5490-5939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csx1_III-U (cl21570)

Seq: JAAUPS010000396.1 Phormidesmis sp. RL_2_1 NODE_8517_length_3830_cov_1.818796, whole genome shotgun sequence (3830 bp)
Overview 1 RT 1: 1-3691 bp Neighborhood of RT #1 [1, 3717] PRK15347 BaeS GIIM HNHc RVT-GII xerC Phage_int_SAM_4 Feature: gene Location: 1-1218 bp Feature: domain Description: PRK15347 Location: 10-283 bp Feature: domain Description: PRK153 47 Location: 10-283 bp Feature: domain Description: BaeS Location: 292-1216 bp Feature: domain Description: BaeS Location: 292-1216 bp Feature: gene Location: 1458-1925 bp Feature: domain Description: GIIM Note: maturase Location: 1464-1563 bp Feature: domain Description: GIIM Note: maturase Location: 1464-1563 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1911 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1911 bp Feature: gene Location: 1930-2601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942-2398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942-23 98 bp Feature: gene Location: 2830-3354 bp Feature: domain Description: xerC Location: 2851-3334 bp Feature: domain Description: xerC Location: 2851-3 3 3 4 bp Feature: gene Location: 3442-3717 bp Feature: domain Description: Phage_int_SAM_4 Location: 3472-3691 bp Feature: domain Description: Phage_int_SAM_4 Location: 3 472-3 691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15347 (two component system sensor kinase), BaeS (COG0642), GIIM (pfam08388), HNHc (smart00507), RVT-GII, xerC (PRK01287), Phage_int_SAM_4 (pfam13495)