myRT

myRT report for GCA_012033355.1_ASM1203335v1

Download annotations/find similar RTs

Seq: JAAUQZ010000118.1 Leptolyngbyaceae cyanobacterium RM1_406_9 NODE_1010_length_15689_cov_6.741164, whole genome shotgun sequence (15689 bp)
Overview 1 RT 1: 2493-8328 bp Neighborhood of RT #1 [2493, 8345] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 2493-3305 bp Feature: domain Description: YfmG Location: 2529-3288 bp Feature: domain Description: YfmG Location: 2529-3288 bp Feature: gene Location: 3399-3644 bp Feature: gene Location: 3647-4744 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3860-4487 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3860-4487 bp Feature: gene Location: 4771-5115 bp Feature: domain Description: Avd_like Location: 4789-5095 bp Feature: domain Description: Avd_like Location: 4789-5095 bp Feature: gene Location: 5241-8345 bp Feature: domain Description: YfmG Location: 7530-8328 bp Feature: domain Description: YfmG Location: 7530-8328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAAUQZ010000187.1 Leptolyngbyaceae cyanobacterium RM1_406_9 NODE_1482_length_11206_cov_5.843939, whole genome shotgun sequence (11206 bp)
Overview 1 RT 1: 1-1984 bp Neighborhood of RT #1 [1, 1984] RVT-Retrons MazF Feature: gene Location: 1-912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136-787 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136-787 bp Feature: gene Location: 1465-1818 bp Feature: domain Description: MazF Location: 1468-1780 bp Feature: domain Description: MazF Location: 1468-1780 bp Feature: gene Location: 1799-1984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MazF (COG2337)

Seq: JAAUQZ010000298.1 Leptolyngbyaceae cyanobacterium RM1_406_9 NODE_3069_length_6345_cov_6.784175, whole genome shotgun sequence (6345 bp)
Overview 1 RT 1: 3407-6343 bp Neighborhood of RT #1 [3407, 6343] YfmG RVT-DGRs Avd_like Feature: gene Location: 3407-4222 bp Feature: domain Description: YfmG Location: 3452-4202 bp Feature: domain Description: YfmG Location: 3 452-4202 bp Feature: gene Location: 4283-4582 bp Feature: gene Location: 4590-5702 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4800-5439 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4800-543 9 bp Feature: gene Location: 5699-6043 bp Feature: domain Description: Avd_like Location: 5717-6023 bp Feature: domain Description: Avd_like Location: 5717-6023 bp Feature: gene Location: 6155-6343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAAUQZ010000031.1 Leptolyngbyaceae cyanobacterium RM1_406_9 NODE_451_length_30280_cov_6.591550, whole genome shotgun sequence (30280 bp)
Overview 1 RT 1: 9432-13562 bp Neighborhood of RT #1 [9432, 13570] DapB_N group_II_RT_mat RVT-UG19 PIN_VapC4-5_FitB-like Feature: gene Location: 9432-9665 bp Feature: gene Location: 9670-9864 bp Feature: domain Description: DapB_N Location: 9688-9769 bp Feature: domain Description: DapB_N Location: 9688-9769 bp Feature: gene Location: 10175-12565 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10226-10481 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10226-104 81 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 10556-11033 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 10556-11033 bp Feature: gene Location: 12941-13150 bp Feature: gene Location: 13151-13570 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 13160-13562 bp Feature: domain Description: PIN_VapC4 -5_FitB-like Location: 13160-13562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DapB_N (pfam01113), group_II_RT_mat (TIGR04416), RVT-UG19, PIN_VapC4-5_FitB-like (cd18754)