myRT

myRT report for GCA_012033395.1_ASM1203339v1

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Seq: JAAUQX010000034.1 Chloroflexia bacterium isolate RM1_31_0 NODE_1721_length_9926_cov_7.260129, whole genome shotgun sequence (9926 bp)
Overview 1 RT 1: 3779-8494 bp Neighborhood of RT #1 [3779, 8494] AAA_21 DUF4435 RVT-GII GIIM IstB_IS21 Feature: gene Location: 3779-3970 bp Feature: gene Location: 4273-5883 bp Feature: domain Description: AAA_21 Location: 4345-4993 bp Feature: domain Description: AAA_21 Location: 4345-4993 bp Feature: domain Description: DUF4435 Location: 5137-5731 bp Feature: domain Description: DUF4435 Location: 51 37-5731 bp Feature: gene Location: 5969-7186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6080-6695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6080-6695 bp Feature: domain Description: GIIM Note: maturase Location: 6767-6980 bp Feature: domain Description: GIIM Note: maturase Location: 6767-6980 bp Feature: gene Location: 7217-7951 bp Feature: domain Description: IstB_IS21 Location: 7376-7898 bp Feature: domain Description: IstB_IS21 Location: 7376-7898 bp Feature: gene Location: 7967-8494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), DUF4435 (pfam14491), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695)

Seq: JAAUQX010000156.1 Chloroflexia bacterium isolate RM1_31_0 NODE_2739_length_6872_cov_5.235878, whole genome shotgun sequence (6872 bp)
Overview 1 RT 1: 673-4236 bp Neighborhood of RT #1 [673, 4268] HTH_XRE RVT-Retrons dcm Feature: gene Location: 673-918 bp Feature: gene Location: 989-1279 bp Feature: domain Description: HTH_XRE Location: 1001-1163 bp Feature: domain Description: HTH_XRE Location: 1001-1163 bp Feature: gene Location: 1344-2141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1440-1953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1440-1953 bp Feature: gene Location: 2134-3165 bp Feature: gene Location: 3162-4268 bp Feature: domain Description: dcm Location: 3174-4236 bp Feature: domain Description: dcm Location: 3174-42 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, dcm (TIGR00675)

Seq: JAAUQX010000166.1 Chloroflexia bacterium isolate RM1_31_0 NODE_2819_length_6738_cov_2.790803, whole genome shotgun sequence (6738 bp)
Overview 1 RT 1: 5175-6738 bp Neighborhood of RT #1 [5175, 6737] Ferritin_CCC1_N RVT-GII Feature: gene Location: 5175-5543 bp Feature: domain Description: Ferritin_CCC1_N Location: 5199-5478 bp Feature: domain Description: Ferritin_CCC1_N Location: 5199-5478 bp Feature: gene Location: 5865-6431 bp Feature: gene Location: 6486-6737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6681-6738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6681-673 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ferritin_CCC1_N (cd01044), RVT-GII

Seq: JAAUQX010000344.1 Chloroflexia bacterium isolate RM1_31_0 NODE_4080_length_5301_cov_1.517201, whole genome shotgun sequence (5301 bp)
Overview 1 RT 1: 24-1780 bp Neighborhood of RT #1 [24, 1860] RVT-GII LysR STKc_PknB_like Feature: gene Location: 24-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-225 bp Feature: gene Location: 548-808 bp Feature: domain Description: LysR Location: 563-710 bp Feature: domain Description: LysR Location: 563-710 bp Feature: gene Location: 1120-1860 bp Feature: domain Description: STKc_PknB_like Location: 1153-1780 bp Feature: domain Description: STKc_PknB_like Location: 1153-1780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LysR (COG0583), STKc_PknB_like (cd14014)

Seq: JAAUQX010000420.1 Chloroflexia bacterium isolate RM1_31_0 NODE_4760_length_4816_cov_4.773939, whole genome shotgun sequence (4816 bp)
Overview 1 RT 1: 1251-4315 bp Neighborhood of RT #1 [1251, 4315] RVT-GII GIIM XylR_N V4R Feature: gene Location: 1251-1379 bp Feature: gene Location: 1518-1664 bp Feature: gene Location: 1837-3249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2197-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2857-3061 bp Feature: domain Description: GIIM Note: maturase Location: 285 7-3061 bp Feature: gene Location: 3513-4133 bp Feature: domain Description: XylR_N Location: 3543-3834 bp Feature: domain Description: XylR_N Location: 35 43-3834 bp Feature: domain Description: V4R Location: 3879-4047 bp Feature: domain Description: V4R Location: 3879-4047 bp Feature: gene Location: 4124-4315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), XylR_N (pfam06505), V4R (smart00989)

Seq: JAAUQX010000441.1 Chloroflexia bacterium isolate RM1_31_0 NODE_4901_length_4737_cov_4.476573, whole genome shotgun sequence (4737 bp)
Overview 1 RT 1: 590-4544 bp Neighborhood of RT #1 [590, 4544] COG5483 RVT-UG2 Feature: gene Location: 590-1375 bp Feature: gene Location: 1441-2406 bp Feature: domain Description: COG5483 Location: 1966-2347 bp Feature: domain Description: COG5483 Location: 196 6 -2347 bp Feature: gene Location: 2390-3940 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2645-3599 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 26 45-3599 bp Feature: gene Location: 4356-4544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5483 (Uncharacterized conserved protein, DUF488 family ), RVT-UG2

Seq: JAAUQX010000929.1 Chloroflexia bacterium isolate RM1_31_0 NODE_9457_length_3274_cov_4.259295, whole genome shotgun sequence (3274 bp)
Overview 1 RT 1: 772-3250 bp Neighborhood of RT #1 [772, 3273] GldN RVT-GII GIIM Feature: gene Location: 772-1446 bp Feature: domain Description: GldN Location: 775-1444 bp Feature: domain Description: GldN Location: 7 7 5-1444 bp Feature: gene Location: 1688-1855 bp Feature: gene Location: 2029-3273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2389-3004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2389-3004 bp Feature: domain Description: GIIM Note: maturase Location: 3049-3250 bp Feature: domain Description: GIIM Note: maturase Location: 3049-3250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GldN (TIGR03523), RVT-GII, GIIM (pfam08388)