myRT

myRT report for GCA_012033475.1_ASM1203347v1

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Seq: JAAUQU010000667.1 Blastochloris sp. isolate RM1_3_16 NODE_10350_length_3115_cov_1.621821, whole genome shotgun sequence (3115 bp)
Overview 1 RT 1: 1461-2909 bp Neighborhood of RT #1 [1461, 3112] Cas1_I-II-III Cas_Cas1 RVT-CRISPR Feature: gene Location: 1461-1868 bp Feature: domain Description: Cas1_I-II-III Location: 1467-1821 bp Feature: domain Description: Cas1 _I-II-III Location: 1 467-1 821 bp Feature: gene Location: 1900-2469 bp Feature: domain Description: Cas_Cas1 Location: 1912-2437 bp Feature: domain Description: Cas_Cas1 Location: 1 91 2-2437 bp Feature: gene Location: 2420-3112 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2651-2909 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2651 -2909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), Cas_Cas1 (pfam01867), RVT-CRISPR

Seq: JAAUQU010000034.1 Blastochloris sp. isolate RM1_3_16 NODE_1271_length_12708_cov_2.590414, whole genome shotgun sequence (12708 bp)
Overview 1 RT 1: 10342-12600 bp Neighborhood of RT #1 [10342, 12707] RVT-CRISPR-like Feature: gene Location: 10342-11511 bp Feature: gene Location: 11698-11895 bp Feature: gene Location: 11952-12707 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12261-12600 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12 2 61-12 600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JAAUQU010000060.1 Blastochloris sp. isolate RM1_3_16 NODE_2084_length_8546_cov_2.826464, whole genome shotgun sequence (8546 bp)
Overview 1 RT 1: 3-4697 bp Neighborhood of RT #1 [3, 4697] PRK00024 RVT-GII GIIM HNHc Phage_int_SAM_3 Feature: gene Location: 3-140 bp Feature: domain Description: PRK00024 Location: 6-117 bp Feature: domain Description: PRK00024 Location: 6-117 bp Feature: gene Location: 714-2423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1701 bp Feature: domain Description: GIIM Note: maturase Location: 1773-1986 bp Feature: domain Description: GIIM Note: maturase Location: 1773 -1986 bp Feature: domain Description: HNHc Note: nucleases Location: 2217-2370 bp Feature: domain Description: HNHc Note: nucleases Location: 2217-23 70 bp Feature: gene Location: 3342-3845 bp Feature: domain Description: Phage_int_SAM_3 Location: 3540-3711 bp Feature: domain Description: Phage_int_SAM_3 Location: 3 540-3 711 bp Feature: gene Location: 4167-4697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Phage_int_SAM_3 (pfam14659)

Seq: JAAUQU010000077.1 Blastochloris sp. isolate RM1_3_16 NODE_2767_length_6812_cov_2.654450, whole genome shotgun sequence (6812 bp)
Overview 1 RT 1: 2312-6714 bp Neighborhood of RT #1 [2312, 6714] RVT-GII KOG4768 Feature: gene Location: 2312-2653 bp Feature: gene Location: 2848-3054 bp Feature: gene Location: 3064-4869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349-4189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 9-4 189 bp Feature: domain Description: KOG4768 Location: 4309-4483 bp Feature: domain Description: KOG4 768 Location: 4 309-4 4 83 bp Feature: gene Location: 5396-5602 bp Feature: gene Location: 5920-6714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: JAAUQU010000222.1 Blastochloris sp. isolate RM1_3_16 NODE_5405_length_4472_cov_2.464212, whole genome shotgun sequence (4472 bp)
Overview 1 RT 1: 219-3886 bp Neighborhood of RT #1 [219, 4056] YfmG RVT-DGRs Avd_like HicB Feature: gene Location: 219-1754 bp Feature: domain Description: YfmG Location: 954-1443 bp Feature: domain Description: YfmG Location: 95 4-1443 bp Feature: gene Location: 1957-3033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2167-2815 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2167-2815 bp Feature: gene Location: 3030-3371 bp Feature: domain Description: Avd_like Location: 3054-3363 bp Feature: domain Description: Avd_like Location: 305 4-3363 bp Feature: gene Location: 3703-4056 bp Feature: domain Description: HicB Location: 3775-3886 bp Feature: domain Description: HicB Location: 3775 -3886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), HicB (pfam05534)

Seq: JAAUQU010000283.1 Blastochloris sp. isolate RM1_3_16 NODE_6168_length_4157_cov_2.036476, whole genome shotgun sequence (4157 bp)
Overview 1 RT 1: 2482-3937 bp Neighborhood of RT #1 [2482, 4155] Avd_like RVT-DGRs Feature: gene Location: 2482-2718 bp Feature: gene Location: 2767-3027 bp Feature: domain Description: Avd_like Location: 2770-2974 bp Feature: domain Description: Avd_like Location: 2770-2974 bp Feature: gene Location: 3136-4155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3292-3937 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3292-3937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JAAUQU010000554.1 Blastochloris sp. isolate RM1_3_16 NODE_9190_length_3330_cov_2.403060, whole genome shotgun sequence (3330 bp)
Overview 1 RT 1: 177-3312 bp Neighborhood of RT #1 [177, 3329] ParM_like RVT-GII Intron_maturas2 HNHc ParM_like Feature: gene Location: 177-728 bp Feature: domain Description: ParM_like Location: 285-681 bp Feature: domain Description: ParM_like Location: 285-681 bp Feature: gene Location: 725-2548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013-1808 bp Feature: domain Description: Intron_maturas2 Location: 1916-2132 bp Feature: domain Description: Intron_maturas2 Location: 1916-2132 bp Feature: domain Description: HNHc Note: nucleases Location: 2336-2498 bp Feature: domain Description: HNHc Note: nucleases Location: 2336-2498 bp Feature: gene Location: 3012-3329 bp Feature: domain Description: ParM_like Location: 3039-3312 bp Feature: domain Description: ParM_like Location: 3039-3312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)