myRT

myRT report for GCA_012034055.1_ASM1203405v1

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Seq: JAAUSG010000322.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_10537_length_4682_cov_10.530845, whole genome shotgun sequence (4682 bp)
Overview 1 RT 1: 784-4591 bp Neighborhood of RT #1 [784, 4680] YfmG Avd_like RVT-DGRs OrfB_Zn_ribbon Feature: gene Location: 784-3474 bp Feature: domain Description: YfmG Location: 2641-3457 bp Feature: domain Description: YfmG Location: 2641 -3457 bp Feature: gene Location: 3657-3995 bp Feature: domain Description: Avd_like Location: 3675-3981 bp Feature: domain Description: Avd_like Location: 3675-3981 bp Feature: gene Location: 4002-4427 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4209-4425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4209-4425 bp Feature: gene Location: 4447-4680 bp Feature: domain Description: OrfB_Zn_ribbon Location: 4453-4591 bp Feature: domain Description: OrfB_Zn_ribbon Location: 4453-4591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, OrfB_Zn_ribbon (pfam07282)

Seq: JAAUSG010000081.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_1211_length_19156_cov_4.466078, whole genome shotgun sequence (19156 bp)
Overview 1 RT 1: 3762-7603 bp Neighborhood of RT #1 [3762, 7603] truB group_II_RT_mat RVT-UG19 Feature: gene Location: 3762-4685 bp Feature: domain Description: truB Location: 3765-4659 bp Feature: domain Description: truB Location: 3765-4659 bp Feature: gene Location: 4764-4925 bp Feature: gene Location: 5142-6344 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5268-5448 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 52 68-5448 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 5529-6024 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 552 9-602 4 bp Feature: gene Location: 6449-7228 bp Feature: gene Location: 7340-7603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT truB (PRK14846), group_II_RT_mat (TIGR04416), RVT-UG19

Seq: JAAUSG010000344.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_13171_length_4039_cov_1.811350, whole genome shotgun sequence (4039 bp)
Overview 1 RT 1: 546-3324 bp Neighborhood of RT #1 [546, 3455] RVT-GII IstB_IS21 COG4584 BACK_Kelch Feature: gene Location: 546-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-103 8 bp Feature: gene Location: 1126-1872 bp Feature: domain Description: IstB_IS21 Location: 1291-1813 bp Feature: domain Description: IstB_IS21 Location: 1291-1813 bp Feature: gene Location: 1890-3455 bp Feature: domain Description: COG4584 Location: 2181-2769 bp Feature: domain Description: COG4584 Location: 2181-2769 bp Feature: domain Description: BACK_Kelch Location: 3255-3324 bp Feature: domain Description: BACK_Kelch Location: 3 255-3 3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), COG4584 (Transposase ), BACK_Kelch

Seq: JAAUSG010000352.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_14244_length_3837_cov_24.961186, whole genome shotgun sequence (3837 bp)
Overview 1 RT 1: 622-2645 bp Neighborhood of RT #1 [622, 2645] RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 622-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682-868 bp Feature: domain Description: GIIM Note: maturase Location: 943-1174 bp Feature: domain Description: GIIM Note: maturase Location: 94 3-1174 bp Feature: gene Location: 1311-2057 bp Feature: domain Description: RVT_N Location: 1443-1620 bp Feature: domain Description: RVT_N Location: 14 4 3-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668-204 3 bp Feature: gene Location: 2088-2252 bp Feature: gene Location: 2376-2645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JAAUSG010000353.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_14287_length_3831_cov_11.311285, whole genome shotgun sequence (3831 bp)
Overview 1 RT 1: 42-1196 bp Neighborhood of RT #1 [42, 1196] RVT-DGRs Feature: gene Location: 42-797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126-552 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126-5 5 2 bp Feature: gene Location: 828-989 bp Feature: gene Location: 1020-1196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JAAUSG010000153.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_2317_length_13214_cov_3.887751, whole genome shotgun sequence (13214 bp)
Overview 1 RT 1: 37-4895 bp Neighborhood of RT #1 [37, 4909] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csx1_III-U Uma2 Feature: gene Location: 37-255 bp Feature: gene Location: 590-865 bp Feature: domain Description: Cas2_I_II_III Location: 599-827 bp Feature: domain Description: Cas2_I_II_III Location: 599-827 bp Feature: gene Location: 964-3231 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1318-1924 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1318-1924 bp Feature: domain Description: Cas1_I-II-III Location: 2197-3196 bp Feature: domain Description: Cas1_I-II-III Location: 2197-3196 bp Feature: gene Location: 3315-4214 bp Feature: domain Description: Csx1_III-U Location: 3939-4125 bp Feature: domain Description: Csx1_III-U Location: 3939-4125 bp Feature: gene Location: 4316-4909 bp Feature: domain Description: Uma2 Location: 4364-4895 bp Feature: domain Description: Uma2 Location: 436 4-4895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csx1_III-U (cl21570), Uma2 (pfam05685)

Seq: JAAUSG010000016.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_279_length_41636_cov_4.670288, whole genome shotgun sequence (41636 bp)
Overview 1 RT 1: 13407-18713 bp Neighborhood of RT #1 [13407, 18724] InsE HTH_21 RVT-GII RVT-GII GIIM PHA02517 PRK05443 Feature: gene Location: 13407-14150 bp Feature: domain Description: InsE Location: 13416-13611 bp Feature: domain Description: InsE Location: 13416-13611 bp Feature: domain Description: HTH_21 Location: 13809-13974 bp Feature: domain Description: HTH_21 Location: 13809-1397 4 bp Feature: gene Location: 14253-14384 bp Feature: gene Location: 14577-15164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14781-15156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147 81-15156 bp Feature: gene Location: 15161-15628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15164-15434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15164-15434 bp Feature: domain Description: GIIM Note: maturase Location: 15521-15626 bp Feature: domain Description: GIIM Note: maturase Location: 15521-15626 bp Feature: gene Location: 15878-16342 bp Feature: domain Description: PHA02517 Location: 15920-16328 bp Feature: domain Description: PHA02517 Location: 15920-16328 bp Feature: gene Location: 16562-18724 bp Feature: domain Description: PRK05443 Location: 16580-18713 bp Feature: domain Description: PRK05443 Location: 16580-187 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK05443 (polyphosphate kinase; Provisional)

Seq: JAAUSG010000034.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_503_length_31280_cov_4.128848, whole genome shotgun sequence (31280 bp)
Overview 1 RT 1: 263-5295 bp Neighborhood of RT #1 [263, 5318] RVT-DGRs HepA Feature: gene Location: 263-1315 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 467-1115 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 467-1115 bp Feature: gene Location: 1611-1901 bp Feature: gene Location: 1917-5318 bp Feature: domain Description: HepA Location: 3000-5295 bp Feature: domain Description: HepA Location: 3000-5295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HepA (COG0553)

Seq: JAAUSG010000052.1 Leptolyngbyaceae cyanobacterium RU_5_1 NODE_719_length_25442_cov_5.740194, whole genome shotgun sequence (25442 bp)
Overview 1 RT 1: 21753-25278 bp Neighborhood of RT #1 [21753, 25278] COG3597 RVT_N RVT-GII GIIM McrA Feature: gene Location: 21753-22679 bp Feature: domain Description: COG3597 Location: 22269-22665 bp Feature: domain Description: COG359 7 Location: 22269 -22665 bp Feature: gene Location: 22701-22874 bp Feature: gene Location: 22976-24655 bp Feature: domain Description: RVT_N Location: 22988-23234 bp Feature: domain Description: RVT_N Location: 229 88-23234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23276-23948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23276-239 48 bp Feature: domain Description: GIIM Note: maturase Location: 24050-24284 bp Feature: domain Description: GIIM Note: maturase Location: 24050-24284 bp Feature: domain Description: McrA Location: 24338-24638 bp Feature: domain Description: McrA Location: 24338-24638 bp Feature: gene Location: 25042-25278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3597 (Uncharacterized conserved protein, DUF697 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)