myRT

myRT report for GCA_012034655.1_ASM1203465v1

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Seq: JAAUOZ010000224.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_2059_length_8374_cov_2.43555, whole genome shotgun sequence (8374 bp)
Overview 1 RT 1: 1187-4369 bp Neighborhood of RT #1 [1187, 4440] RVT_N RVT-GII GIIM HNHc PIN_VapC-like Feature: gene Location: 1187-1393 bp Feature: gene Location: 1678-1878 bp Feature: gene Location: 1976-3607 bp Feature: domain Description: RVT_N Location: 2009-2255 bp Feature: domain Description: RVT_N Location: 2009-2255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2300-2945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2300-2945 bp Feature: domain Description: GIIM Note: maturase Location: 3026-3257 bp Feature: domain Description: GIIM Note: maturase Location: 3026-3257 bp Feature: domain Description: HNHc Note: nucleases Location: 3440-3590 bp Feature: domain Description: HNHc Note: nucleases Location: 3440-3590 bp Feature: gene Location: 3738-3962 bp Feature: gene Location: 3967-4440 bp Feature: domain Description: PIN_VapC-like Location: 4018-4369 bp Feature: domain Description: PIN_VapC-like Location: 401 8-4369 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: JAAUOZ010000225.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_2097_length_8271_cov_1.47446, whole genome shotgun sequence (8271 bp)
Overview 1 RT 1: 4173-7436 bp Neighborhood of RT #1 [4173, 7436] RelE YiaG RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 4173-4490 bp Feature: domain Description: RelE Location: 4302-4470 bp Feature: domain Description: RelE Location: 4302 -4470 bp Feature: gene Location: 4487-4798 bp Feature: domain Description: YiaG Location: 4559-4757 bp Feature: domain Description: YiaG Location: 4559-4757 bp Feature: gene Location: 5080-6135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5086-5473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5086-5473 bp Feature: domain Description: GIIM Note: maturase Location: 5554-5785 bp Feature: domain Description: GIIM Note: maturase Location: 5554-5785 bp Feature: domain Description: HNHc Note: nucleases Location: 5968-6118 bp Feature: domain Description: HNHc Note: nucleases Location: 5968-6118 bp Feature: gene Location: 6212-6715 bp Feature: domain Description: RVT_N Location: 6248-6488 bp Feature: domain Description: RVT_N Location: 62 48-6488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6539-6653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6539-6653 bp Feature: gene Location: 6740-7054 bp Feature: gene Location: 7164-7436 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: JAAUOZ010000040.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_269_length_36333_cov_2.91833, whole genome shotgun sequence (36333 bp)
Overview 1 RT 1: 35172-36123 bp Neighborhood of RT #1 [35172, 36332] Cas_Cas1 RVT-CRISPR Feature: gene Location: 35172-35396 bp Feature: gene Location: 35495-35908 bp Feature: domain Description: Cas_Cas1 Location: 35510-35900 bp Feature: domain Description: Cas_Cas1 Location: 3 5510-3 5900 bp Feature: gene Location: 35967-36332 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 36045-36123 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 6045-3 6123 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: JAAUOZ010000064.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_444_length_27675_cov_2.93502, whole genome shotgun sequence (27675 bp)
Overview 1 RT 1: 21791-26954 bp Neighborhood of RT #1 [21791, 26992] Cas10_III Cas10_III Cas_Cas02710 RVT-CRISPR RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 21791-23413 bp Feature: domain Description: Cas10_III Location: 21809-22223 bp Feature: domain Description: Cas10_III Location: 21809-22223 bp Feature: domain Description: Cas10_III Location: 22604-22994 bp Feature: domain Description: Cas10_III Location: 22604 -22994 bp Feature: gene Location: 23779-24606 bp Feature: domain Description: Cas_Cas02710 Location: 24280-24532 bp Feature: domain Description: Cas_Cas02710 Location: 24 280-24 532 bp Feature: gene Location: 24610-25107 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24835-25060 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24 835-25060 bp Feature: gene Location: 25104-26717 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 25110-25440 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 25110-254 4 0 bp Feature: domain Description: Cas1_I-II-III Location: 25713-26682 bp Feature: domain Description: Cas1_I-II-III Location: 25713-26682 bp Feature: gene Location: 26717-26992 bp Feature: domain Description: Cas2_I_II_III Location: 26726-26954 bp Feature: domain Description: Cas2_I_II_III Location: 26726-26954 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: JAAUOZ010000401.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_6106_length_3694_cov_2.06981, whole genome shotgun sequence (3694 bp)
Overview 1 RT 1: 1824-3603 bp Neighborhood of RT #1 [1824, 3603] group_II_RT_mat RVT-GII RVT-GII GIIM Feature: gene Location: 1824-2093 bp Feature: gene Location: 2145-2318 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2151-2265 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 215 1-2265 bp Feature: gene Location: 2341-2511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2350-2506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235 0-25 06 bp Feature: gene Location: 2792-3238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2798-2894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2798-2894 bp Feature: domain Description: GIIM Note: maturase Location: 2942-3143 bp Feature: domain Description: GIIM Note: maturase Location: 2942-3143 bp Feature: gene Location: 3394-3603 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: JAAUOZ010000447.1 Leptolyngbyaceae cyanobacterium CSU_1_3 NODE_8403_length_3067_cov_0.884354, whole genome shotgun sequence (3067 bp)
Overview 1 RT 1: 2-3064 bp Neighborhood of RT #1 [2, 3064] RVT-GII RVT-GII GIIM Feature: gene Location: 2-127 bp Feature: gene Location: 293-700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-6 50 bp Feature: gene Location: 1235-2551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430-2048 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: gene Location: 2789-3064 bp Sorry, your browser does not support inline SVG.
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