myRT

myRT report for GCA_012035135.1_ASM1203513v1

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Seq: JAAUPI010000239.1 Microcoleus sp. CSU_2_2 NODE_2137_length_8101_cov_18.4398, whole genome shotgun sequence (8101 bp)
Overview 1 RT 1: 6163-7943 bp Neighborhood of RT #1 [6163, 8098] Uma2 XisI-like RVT-GII GIIM Feature: gene Location: 6163-6741 bp Feature: domain Description: Uma2 Location: 6187-6736 bp Feature: domain Description: Uma2 Location: 61 87-6736 bp Feature: gene Location: 6852-7097 bp Feature: domain Description: XisI-like Location: 6912-7065 bp Feature: domain Description: XisI-like Location: 691 2-7065 bp Feature: gene Location: 7373-7534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7403-7526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7403-7526 bp Feature: gene Location: 7538-8098 bp Feature: domain Description: GIIM Note: maturase Location: 7718-7943 bp Feature: domain Description: GIIM Note: maturase Location: 771 8-7943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), XisI-like (cl07462), RVT-GII, GIIM (pfam08388)

Seq: JAAUPI010000253.1 Microcoleus sp. CSU_2_2 NODE_2343_length_7446_cov_17.0484, whole genome shotgun sequence (7446 bp)
Overview 1 RT 1: 3961-7358 bp Neighborhood of RT #1 [3961, 7358] YfmG Avd_like RVT-DGRs Feature: gene Location: 3961-5670 bp Feature: domain Description: YfmG Location: 4792-5659 bp Feature: domain Description: YfmG Location: 4792 -5659 bp Feature: gene Location: 5791-6144 bp Feature: domain Description: Avd_like Location: 5809-6115 bp Feature: domain Description: Avd_like Location: 5809-6115 bp Feature: gene Location: 6644-7168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6854-7112 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6854-7112 bp Feature: gene Location: 7227-7358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAUPI010000036.1 Microcoleus sp. CSU_2_2 NODE_355_length_31758_cov_18.6587, whole genome shotgun sequence (31758 bp)
Overview 1 RT 1: 8765-13467 bp Neighborhood of RT #1 [8765, 13467] chlN HicB TPR RVT-Retrons Feature: gene Location: 8765-10174 bp Feature: domain Description: chlN Location: 8783-10157 bp Feature: domain Description: chlN Location: 8783 -10157 bp Feature: gene Location: 10396-10734 bp Feature: domain Description: HicB Location: 10426-10612 bp Feature: domain Description: HicB Location: 10426-10612 bp Feature: gene Location: 10819-12549 bp Feature: domain Description: TPR Location: 10846-11050 bp Feature: domain Description: TPR Location: 10846-11050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11419-12040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11419-12040 bp Feature: gene Location: 12659-12904 bp Feature: gene Location: 13105-13467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT chlN (CHL00073), HicB (pfam05534), TPR (smart00028), RVT-Retrons

Seq: JAAUPI010000050.1 Microcoleus sp. CSU_2_2 NODE_456_length_27152_cov_28.8551, whole genome shotgun sequence (27152 bp)
Overview 1 RT 1: 1610-5024 bp Neighborhood of RT #1 [1610, 5065] ThiF_MoeB_HesA_family group_II_RT_mat RVT-CRISPR Cas_Cas1 Cas1_I-II-III Feature: gene Location: 1610-2704 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 1904-2309 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 1904 -2309 bp Feature: gene Location: 2973-3254 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3057-3234 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3057-3234 bp Feature: gene Location: 3293-4015 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3299-3833 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3299-3833 bp Feature: gene Location: 4062-4649 bp Feature: domain Description: Cas_Cas1 Location: 4074-4605 bp Feature: domain Description: Cas_Cas1 Location: 4 074 -4 605 bp Feature: gene Location: 4664-5065 bp Feature: domain Description: Cas1_I-II-III Location: 4667-5024 bp Feature: domain Description: Cas1_I-II-III Location: 4 667-5024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiF_MoeB_HesA_family (cd00757), group_II_RT_mat (TIGR04416), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas1_I-II-III (cl00656)

Seq: JAAUPI010000062.1 Microcoleus sp. CSU_2_2 NODE_550_length_23988_cov_18.8486, whole genome shotgun sequence (23988 bp)
Overview 1 RT 1: 21096-23534 bp Neighborhood of RT #1 [21096, 23545] RVT_N RVT-GII GIIM McrA Feature: gene Location: 21096-21713 bp Feature: gene Location: 21725-21901 bp Feature: gene Location: 21917-23545 bp Feature: domain Description: RVT_N Location: 21947-22193 bp Feature: domain Description: RVT_N Location: 21947-22193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22235-22874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22235 -22874 bp Feature: domain Description: GIIM Note: maturase Location: 22961-23195 bp Feature: domain Description: GIIM Note: maturase Location: 22961-23195 bp Feature: domain Description: McrA Location: 23276-23534 bp Feature: domain Description: McrA Location: 23276-235 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAUPI010000070.1 Microcoleus sp. CSU_2_2 NODE_589_length_23031_cov_18.9693, whole genome shotgun sequence (23031 bp)
Overview 1 RT 1: 4440-8634 bp Neighborhood of RT #1 [4440, 8634] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4440-4706 bp Feature: gene Location: 4951-5088 bp Feature: gene Location: 5637-7490 bp Feature: domain Description: RVT_N Location: 5709-5955 bp Feature: domain Description: RVT_N Location: 5709-5955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5997-6705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5997-6 705 bp Feature: domain Description: GIIM Note: maturase Location: 6804-7038 bp Feature: domain Description: GIIM Note: maturase Location: 6 804-7038 bp Feature: domain Description: HNHc Note: nucleases Location: 7239-7386 bp Feature: domain Description: HNHc Note: nucleases Location: 7239-7386 bp Feature: gene Location: 7532-8080 bp Feature: gene Location: 8266-8634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)