myRT

myRT report for GCA_012035165.1_ASM1203516v1

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Seq: JAAUOR010000901.1 Scytonema sp. CRU_2_7 NODE_12319_length_3243_cov_1.04557, whole genome shotgun sequence (3243 bp)
Overview 1 RT 1: 305-3170 bp Neighborhood of RT #1 [305, 3241] RVT-GII GIIM HNH RVT-GII RVT_N INT_FimBE_like Feature: gene Location: 305-1315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314-485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 4-485 bp Feature: domain Description: GIIM Note: maturase Location: 587-818 bp Feature: domain Description: GIIM Note: maturase Location: 587-81 8 bp Feature: domain Description: HNH Note: nucleases Location: 1031-1163 bp Feature: domain Description: HNH Note: nucleases Location: 1 031 -1 1 63 bp Feature: gene Location: 1680-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 737-1 833 bp Feature: gene Location: 1837-2121 bp Feature: domain Description: RVT_N Location: 1891-2110 bp Feature: domain Description: RVT_N Location: 1 891 -21 1 0 bp Feature: gene Location: 2732-3241 bp Feature: domain Description: INT_FimBE_like Location: 2756-3170 bp Feature: domain Description: INT_FimBE_like Location: 2756-31 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), INT_FimBE_like (cd01197)

Seq: JAAUOR010000100.1 Scytonema sp. CRU_2_7 NODE_1311_length_11726_cov_4.01069, whole genome shotgun sequence (11726 bp)
Overview 1 RT 1: 4263-9912 bp Neighborhood of RT #1 [4263, 10061] RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS1 Feature: gene Location: 4263-4745 bp Feature: gene Location: 5344-6651 bp Feature: gene Location: 7292-9019 bp Feature: domain Description: RVT_N Location: 7346-7589 bp Feature: domain Description: RVT_N Location: 7346-7589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7640-8306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7640-8306 bp Feature: domain Description: GIIM Note: maturase Location: 8372-8591 bp Feature: domain Description: GIIM Note: maturase Location: 8372 -8591 bp Feature: domain Description: HNHc Note: nucleases Location: 8825-8972 bp Feature: domain Description: HNHc Note: nucleases Location: 882 5-8972 bp Feature: gene Location: 9108-9374 bp Feature: gene Location: 9561-10061 bp Feature: domain Description: DDE_Tnp_IS1 Location: 9570-9912 bp Feature: domain Description: DDE_Tnp_IS1 Location: 9570-9912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS1 (pfam03400)

Seq: JAAUOR010000224.1 Scytonema sp. CRU_2_7 NODE_2194_length_8620_cov_1.76816, whole genome shotgun sequence (8620 bp)
Overview 1 RT 1: 6166-8433 bp Neighborhood of RT #1 [6166, 8543] RNR_II_monomer RNR_II_monomer RVT-GII GIIM McrA Feature: gene Location: 6166-6453 bp Feature: domain Description: RNR_II_monomer Location: 6169-6448 bp Feature: domain Description: RNR_II_monomer Location: 6169-6448 bp Feature: gene Location: 6456-6986 bp Feature: domain Description: RNR_II_monomer Location: 6462-6948 bp Feature: domain Description: RNR_II_monomer Location: 6462-6948 bp Feature: gene Location: 7032-8543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7035-7728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703 5-7728 bp Feature: domain Description: GIIM Note: maturase Location: 7830-8064 bp Feature: domain Description: GIIM Note: maturase Location: 783 0-8064 bp Feature: domain Description: McrA Location: 8160-8433 bp Feature: domain Description: McrA Location: 8160-843 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAUOR010000601.1 Scytonema sp. CRU_2_7 NODE_6866_length_4561_cov_0.633288, whole genome shotgun sequence (4561 bp)
Overview 1 RT 1: 1549-4481 bp Neighborhood of RT #1 [1549, 4558] RT_ZFREV_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 DUF4096 Feature: gene Location: 1549-1926 bp Feature: gene Location: 1992-2414 bp Feature: domain Description: RT_ZFREV_like Location: 2139-2328 bp Feature: domain Description: RT_ZFREV_like Location: 2139-2328 bp Feature: gene Location: 2514-3623 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2565-2739 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2565-2739 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3030-3387 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3030-3387 bp Feature: gene Location: 3620-4078 bp Feature: domain Description: Integrase_H2C2 Location: 3710-3875 bp Feature: domain Description: Integrase_H2C2 Location: 3710-3875 bp Feature: gene Location: 4244-4558 bp Feature: domain Description: DUF4096 Location: 4265-4481 bp Feature: domain Description: DUF4 096 Location: 4 265-4 4 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_ZFREV_like (cd03715), RVT-UG11/RVT-DGRs/RVT-UG17/RVT-GII(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), DUF4096 (pfam13340)

Seq: JAAUOR010000022.1 Scytonema sp. CRU_2_7 NODE_709_length_17386_cov_1.90729, whole genome shotgun sequence (17386 bp)
Overview 1 RT 1: 6957-14669 bp Neighborhood of RT #1 [6957, 14707] TPR_12 TPR_12 TPR_12 TPR COG4995 InsQ RVT-GII GIIM HNHc ddl Feature: gene Location: 6957-9881 bp Feature: domain Description: TPR_12 Location: 7182-7365 bp Feature: domain Description: TPR_12 Location: 7182-7365 bp Feature: domain Description: TPR_12 Location: 7407-7605 bp Feature: domain Description: TPR_12 Location: 7407-7605 bp Feature: domain Description: TPR_12 Location: 7647-7821 bp Feature: domain Description: TPR_12 Location: 7647-7821 bp Feature: domain Description: TPR Location: 8022-8583 bp Feature: domain Description: TPR Location: 8022-85 83 bp Feature: domain Description: COG4995 Location: 8604-9876 bp Feature: domain Description: COG4995 Location: 8604-9876 bp Feature: gene Location: 10099-11091 bp Feature: domain Description: InsQ Location: 10237-10930 bp Feature: domain Description: InsQ Location: 10237-10930 bp Feature: gene Location: 11730-12686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11889-11982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11889-11982 bp Feature: domain Description: GIIM Note: maturase Location: 12039-12267 bp Feature: domain Description: GIIM Note: maturase Location: 12039-12267 bp Feature: domain Description: HNHc Note: nucleases Location: 12492-12651 bp Feature: domain Description: HNHc Note: nucleases Location: 12492-1265 1 bp Feature: gene Location: 12759-13514 bp Feature: gene Location: 13583-14707 bp Feature: domain Description: ddl Location: 13586-14669 bp Feature: domain Description: ddl Location: 135 86-14669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR (smart00028), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), InsQ (COG0675), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ddl (PRK01966)

Seq: JAAUOR010000636.1 Scytonema sp. CRU_2_7 NODE_7603_length_4314_cov_1.77239, whole genome shotgun sequence (4314 bp)
Overview 1 RT 1: 2001-4050 bp Neighborhood of RT #1 [2001, 4256] RVT-DGRs Feature: gene Location: 2001-2876 bp Feature: gene Location: 2897-3259 bp Feature: gene Location: 3198-4256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3402-4050 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3402-4050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JAAUOR010000650.1 Scytonema sp. CRU_2_7 NODE_7966_length_4210_cov_1.40558, whole genome shotgun sequence (4210 bp)
Overview 1 RT 1: 2-2116 bp Neighborhood of RT #1 [2, 2116] RVT-GII Feature: gene Location: 2-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-47 6 bp Feature: gene Location: 762-1658 bp Feature: gene Location: 1748-2116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAUOR010000665.1 Scytonema sp. CRU_2_7 NODE_8260_length_4119_cov_1.88502, whole genome shotgun sequence (4119 bp)
Overview 1 RT 1: 368-4112 bp Neighborhood of RT #1 [368, 4117] RVT_N RVT-GII GIIM HNH Pentapeptide YjbI Feature: gene Location: 368-655 bp Feature: gene Location: 742-915 bp Feature: gene Location: 1163-3010 bp Feature: domain Description: RVT_N Location: 1202-1448 bp Feature: domain Description: RVT_N Location: 1202-1448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1490-2207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1490-2207 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2564 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2564 bp Feature: domain Description: HNH Note: nucleases Location: 2795-2933 bp Feature: domain Description: HNH Note: nucleases Location: 2795-2933 bp Feature: gene Location: 3627-3785 bp Feature: domain Description: Pentapeptide Location: 3639-3720 bp Feature: domain Description: Pentapeptide Location: 3639-3720 bp Feature: gene Location: 3797-4117 bp Feature: domain Description: YjbI Location: 3947-4112 bp Feature: domain Description: YjbI Location: 3947-4112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Pentapeptide (pfam00805), YjbI (COG2346)

Seq: JAAUOR010000680.1 Scytonema sp. CRU_2_7 NODE_8478_length_4053_cov_1.9083, whole genome shotgun sequence (4053 bp)
Overview 1 RT 1: 2-2586 bp Neighborhood of RT #1 [2, 2591] HNH RVT_N RVT-GII GIIM RNR_II_monomer Feature: gene Location: 2-145 bp Feature: domain Description: HNH Note: nucleases Location: 8-104 bp Feature: domain Description: HNH Note: nucleases Location: 8-104 bp Feature: gene Location: 202-1608 bp Feature: domain Description: RVT_N Location: 205-358 bp Feature: domain Description: RVT_N Location: 205-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1072 bp Feature: domain Description: GIIM Note: maturase Location: 1171-1405 bp Feature: domain Description: GIIM Note: maturase Location: 1171-1405 bp Feature: gene Location: 1998-2216 bp Feature: gene Location: 2397-2591 bp Feature: domain Description: RNR_II_monomer Location: 2403-2586 bp Feature: domain Description: RNR_II_monomer Location: 2403-2586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RNR_II_monomer (cd01676)