myRT

myRT report for GCA_012056855.1_ASM1205685v1

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Seq: BHWL01000027.1 Escherichia coli MH15-262M DNA, contig_14_1, whole genome shotgun sequence (7614 bp)
Overview 1 RT 1: 4059-7613 bp Neighborhood of RT #1 [4059, 7613] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4059-4292 bp Feature: domain Description: DUF905 Location: 4089-4287 bp Feature: domain Description: DUF905 Location: 4089-4287 bp Feature: gene Location: 4350-4790 bp Feature: domain Description: PRK13732 Location: 4356-4788 bp Feature: domain Description: PRK1 3732 Location: 4356-4788 bp Feature: gene Location: 4985-6886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-6083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-6083 bp Feature: domain Description: Intron_maturas2 Location: 6197-6455 bp Feature: domain Description: Intron_maturas2 Location: 61 97-6455 bp Feature: domain Description: HNHc Note: nucleases Location: 6629-6791 bp Feature: domain Description: HNHc Note: nucleases Location: 6629-6791 bp Feature: gene Location: 7449-7613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BHWL01000083.1 Escherichia coli MH15-262M DNA, contig_57_1, whole genome shotgun sequence (21816 bp)
Overview 1 RT 1: 225-3576 bp Neighborhood of RT #1 [225, 3638] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_Tn3 Feature: gene Location: 225-704 bp Feature: domain Description: PHA02517 Location: 285-639 bp Feature: domain Description: PHA02 517 Location: 2 85-639 bp Feature: gene Location: 1296-2819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569-2301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569-2 301 bp Feature: domain Description: GIIM Note: maturase Location: 2376-2574 bp Feature: domain Description: GIIM Note: maturase Location: 2 376-2 574 bp Feature: gene Location: 2937-3383 bp Feature: domain Description: PHA02517 Location: 2940-3378 bp Feature: domain Description: PHA02 517 Location: 2 940-3378 bp Feature: gene Location: 3465-3638 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3468-3576 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3468-3576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)

Seq: BHWL01000119.1 Escherichia coli MH15-262M DNA, contig_84_1, whole genome shotgun sequence (53024 bp)
Overview 1 RT 1: 27340-35041 bp Neighborhood of RT #1 [27340, 35178] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27340-28593 bp Feature: domain Description: proA Location: 27367-28558 bp Feature: domain Description: proA Location: 273 67-28558 bp Feature: gene Location: 29147-29617 bp Feature: gene Location: 29964-33173 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30492-30981 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0492-3 0981 bp Feature: domain Description: nitrilase Location: 32487-33084 bp Feature: domain Description: nitrilase Location: 3 2487-3 3 084 bp Feature: gene Location: 33468-34271 bp Feature: domain Description: AbiEi_3_N Location: 33501-33762 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 501-3 3 762 bp Feature: domain Description: AbiEi_3 Location: 33774-34230 bp Feature: domain Description: AbiEi_3 Location: 3 3 774-3 423 0 bp Feature: gene Location: 34258-35178 bp Feature: domain Description: AbiEii Location: 34300-35041 bp Feature: domain Description: AbiEii Location: 3 43 00-3 5041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: BHWL01000149.1 Escherichia coli MH15-262M DNA, contig_106_1, whole genome shotgun sequence (2621 bp)
Overview 1 RT 1: 124-2619 bp Neighborhood of RT #1 [124, 2619] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 124-1791 bp Feature: domain Description: RVT_N Location: 172-409 bp Feature: domain Description: RVT_N Location: 172-4 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 60-1102 bp Feature: domain Description: GIIM Note: maturase Location: 1153-1387 bp Feature: domain Description: GIIM Note: maturase Location: 1153-1387 bp Feature: domain Description: HNHc Note: nucleases Location: 1597-1756 bp Feature: domain Description: HNHc Note: nucleases Location: 1597-1756 bp Feature: gene Location: 2071-2253 bp Feature: gene Location: 2365-2619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BHWL01000419.1 Escherichia coli MH15-262M DNA, contig_348_1, whole genome shotgun sequence (746 bp)
Overview 1 RT 1: 31-662 bp Neighborhood of RT #1 [31, 745] RVT-GII Feature: gene Location: 31-243 bp Feature: gene Location: 368-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BHWL01000448.1 Escherichia coli MH15-262M DNA, contig_377_1, whole genome shotgun sequence (455 bp)
Overview 1 RT 1: 3-453 bp Neighborhood of RT #1 [3, 452] RVT-GII Feature: gene Location: 3-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BHWL01000498.1 Escherichia coli MH15-262M DNA, contig_426_1, whole genome shotgun sequence (444 bp)
Overview 1 RT 1: 1-382 bp Neighborhood of RT #1 [1, 441] RVT-UNC Feature: gene Location: 1-441 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 100-382 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 100-382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-CRISPR/RVT-DGRs(RVT-UNC)