myRT

myRT report for GCA_012062875.1_ASM1206287v1

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Seq: WVUT01000014.1 Escherichia coli strain NIFDS_EC2016_8 EC2016_8_Contig14, whole genome shotgun sequence (141687 bp)
Overview 1 RT 1: 85233-89115 bp Neighborhood of RT #1 [85233, 89120] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 85233-85949 bp Feature: domain Description: rph Location: 85236-85944 bp Feature: domain Description: rph Location: 85236-85944 bp Feature: gene Location: 86000-86656 bp Feature: domain Description: pyrE Location: 86018-86651 bp Feature: domain Description: pyrE Location: 8601 8-86651 bp Feature: gene Location: 86954-87913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87089-87638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87089-87638 bp Feature: gene Location: 87959-88555 bp Feature: domain Description: slmA Location: 87965-88541 bp Feature: domain Description: slmA Location: 87965-88541 bp Feature: gene Location: 88662-89120 bp Feature: domain Description: dut Location: 88668-89115 bp Feature: domain Description: dut Location: 88668-891 1 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: WVUT01000017.1 Escherichia coli strain NIFDS_EC2016_8 EC2016_8_Contig17, whole genome shotgun sequence (99539 bp)
Overview 1 RT 1: 55624-58726 bp Neighborhood of RT #1 [55624, 58726] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 55624-55815 bp Feature: gene Location: 55886-56020 bp Feature: gene Location: 56093-57760 bp Feature: RT Description: RVT_N Location: 56141-56378 bp Feature: RT Description: RVT_N Location: 56141-56378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56429-57071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5642 9-57071 bp Feature: domain Description: GIIM Note: maturase Location: 57122-57356 bp Feature: domain Description: GIIM Note: maturase Location: 5712 2 -57356 bp Feature: domain Description: HNHc Note: nucleases Location: 57566-57725 bp Feature: domain Description: HNHc Note: nucleases Location: 57566-5772 5 bp Feature: gene Location: 58040-58222 bp Feature: gene Location: 58334-58726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)