myRT

myRT report for GCA_012062965.1_ASM1206296v1

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Seq: WVUW01000004.1 Escherichia coli strain NIFDS_EC2016_I10 EC2016_I10_Contig4, whole genome shotgun sequence (253756 bp)
Overview 1 RT 1: 249036-253743 bp Neighborhood of RT #1 [249036, 253754] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 249036-250622 bp Feature: domain Description: prfC Location: 249054-250620 bp Feature: domain Description: prfC Location: 249054-250620 bp Feature: gene Location: 250842-251102 bp Feature: domain Description: PRK10597 Location: 250845-251085 bp Feature: domain Description: PRK1 0597 Location: 250845-251 085 bp Feature: gene Location: 251460-253064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251751-252342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251 751 -252342 bp Feature: domain Description: TIR_2 Location: 252669-253002 bp Feature: domain Description: TIR_2 Location: 252669-253002 bp Feature: gene Location: 253509-253754 bp Feature: domain Description: Caudo_TAP Location: 253512-253743 bp Feature: domain Description: Caudo_TAP Location: 25351 2-253743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: WVUW01000057.1 Escherichia coli strain NIFDS_EC2016_I10 EC2016_I10_Contig57, whole genome shotgun sequence (10125 bp)
Overview 1 RT 1: 2372-6372 bp Neighborhood of RT #1 [2372, 6380] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2372-3733 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: domain Description: DcuC Location: 2 375-3707 bp Feature: gene Location: 3786-4157 bp Feature: gene Location: 4379-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: gene Location: 4873-5022 bp Feature: gene Location: 5349-6380 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)