myRT

myRT report for GCA_012062985.1_ASM1206298v1

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Seq: WVUY01000016.1 Escherichia coli strain NIFDS_EC2016_I177 EC2016_I177_Contig16, whole genome shotgun sequence (107281 bp)
Overview 1 RT 1: 9811-15393 bp Neighborhood of RT #1 [9811, 15393] P Q RVT-Retrons Feature: gene Location: 9811-11577 bp Feature: domain Description: P Location: 9838-11572 bp Feature: domain Description: P Location: 9838-1 1 572 bp Feature: gene Location: 11577-12611 bp Feature: domain Description: Q Location: 11583-12603 bp Feature: domain Description: Q Location: 1 1 583-1 2603 bp Feature: gene Location: 12656-14416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12800-13424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2800-1 3424 bp Feature: gene Location: 14649-14795 bp Feature: gene Location: 15058-15393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, P (PHA02535)

Seq: WVUY01000041.1 Escherichia coli strain NIFDS_EC2016_I177 EC2016_I177_Contig41, whole genome shotgun sequence (22540 bp)
Overview 1 RT 1: 11248-15118 bp Neighborhood of RT #1 [11248, 15118] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11248-11574 bp Feature: domain Description: InsE Location: 11251-11572 bp Feature: domain Description: InsE Location: 112 51-11572 bp Feature: gene Location: 11574-12053 bp Feature: domain Description: PHA02517 Location: 11634-11988 bp Feature: domain Description: PHA02 517 Location: 11634-11988 bp Feature: gene Location: 12645-14168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12918-13650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 918-13650 bp Feature: domain Description: GIIM Note: maturase Location: 13725-13923 bp Feature: domain Description: GIIM Note: maturase Location: 1372 5-1392 3 bp Feature: gene Location: 14333-14737 bp Feature: domain Description: PHA02517 Location: 14336-14726 bp Feature: domain Description: PHA02 517 Location: 14336-1472 6 bp Feature: gene Location: 14912-15118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WVUY01000042.1 Escherichia coli strain NIFDS_EC2016_I177 EC2016_I177_Contig42, whole genome shotgun sequence (18731 bp)
Overview 1 RT 1: 12355-16336 bp Neighborhood of RT #1 [12355, 16362] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 12355-13386 bp Feature: domain Description: Asparaginase_2 Location: 12445-13378 bp Feature: domain Description: Asparaginase_2 Location: 12445-13 3 78 bp Feature: gene Location: 13712-13861 bp Feature: gene Location: 13909-14355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14215-14317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14215-143 17 bp Feature: gene Location: 14577-14948 bp Feature: gene Location: 15001-16362 bp Feature: domain Description: DcuC Location: 15004-16336 bp Feature: domain Description: DcuC Location: 15004-163 3 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)