myRT

myRT report for GCA_012063265.1_ASM1206326v1

Download annotations/find similar RTs

Seq: WVVM01000040.1 Escherichia coli strain NIFDS_EC2018_100 EC2018_100_Contig40, whole genome shotgun sequence (13927 bp)
Overview 1 RT 1: 10375-13775 bp Neighborhood of RT #1 [10375, 13798] RVT-UG7 PRK09692 Feature: gene Location: 10375-10515 bp Feature: gene Location: 10625-11365 bp Feature: gene Location: 11362-12990 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 11770-12199 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 1 770-1 21 99 bp Feature: gene Location: 12983-13798 bp Feature: domain Description: PRK09692 Location: 12995-13775 bp Feature: domain Description: PRK09692 Location: 1 2995-1 3775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional)

Seq: WVVM01000067.1 Escherichia coli strain NIFDS_EC2018_100 EC2018_100_Contig67, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2 068-2 2 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)