myRT

myRT report for GCA_012102995.1_ASM1210299v1

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Seq: JAAVNI010000119.1 Pseudomonas aeruginosa strain MNPAB MNPAB_contig_119, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: RT Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 668-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 21 33-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAVNI010000018.1 Pseudomonas aeruginosa strain MNPAB MNPAB_contig_18, whole genome shotgun sequence (103810 bp)
Overview 1 RT 1: 2-2980 bp Neighborhood of RT #1 [2, 2980] RVT-GII GIIM Feature: gene Location: 2-265 bp Feature: gene Location: 801-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1671 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1971 bp Feature: domain Description: GIIM Note: maturase Location: 1749-1971 bp Feature: gene Location: 2219-2617 bp Feature: gene Location: 2801-2980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAVNI010000002.1 Pseudomonas aeruginosa strain MNPAB MNPAB_contig_2, whole genome shotgun sequence (213766 bp)
Overview 1 RT 1: 49563-58434 bp 2 RT 2: 74699-87030 bp Neighborhood of RT #1 [49563, 58442] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74699, 87185] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HipA_C IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49563-50237 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: gene Location: 50234-51250 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG3 178 Location: 5023 7-5123 6 bp Feature: gene Location: 52523-54235 bp Feature: RT Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53 504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 53 714-53 864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: gene Location: 54368-57169 bp Feature: domain Description: LptD Location: 54563-57155 bp Feature: domain Description: LptD Location: 54563 -57155 bp Feature: gene Location: 57228-58442 bp Feature: domain Description: PRK10770 Location: 57240-58434 bp Feature: domain Description: PRK10770 Location: 57240-5843 4 bp Feature: gene Location: 74699-76552 bp Feature: domain Description: PRK05658 Location: 74711-76550 bp Feature: domain Description: PRK05658 Location: 74711-76550 bp Feature: gene Location: 76659-80396 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76767-77424 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76767-77424 bp Feature: domain Description: PRK09776 Location: 77637-78108 bp Feature: domain Description: PRK09776 Location: 7763 7-78108 bp Feature: domain Description: PAS Location: 78153-78690 bp Feature: domain Description: PAS Location: 78153 -78690 bp Feature: domain Description: PRK10060 Location: 78699-80346 bp Feature: domain Description: PRK10060 Location: 78699-803 46 bp Feature: gene Location: 81477-83162 bp Feature: RT Description: RVT_N Location: 81534-81774 bp Feature: RT Description: RVT_N Location: 8153 4-81774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81822-82458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81822-82458 bp Feature: domain Description: GIIM Note: maturase Location: 82512-82743 bp Feature: domain Description: GIIM Note: maturase Location: 82512-82743 bp Feature: domain Description: HNH Note: nucleases Location: 82995-83133 bp Feature: domain Description: HNH Note: nucleases Location: 82995-83 13 3 bp Feature: gene Location: 83466-83783 bp Feature: domain Description: HipA_C Location: 83499-83667 bp Feature: domain Description: HipA_C Location: 83 499-83 667 bp Feature: gene Location: 84459-87185 bp Feature: domain Description: IMPa_N_2 Location: 84666-85248 bp Feature: domain Description: IMPa_N_2 Location: 84666-85248 bp Feature: domain Description: IMPa_helical Location: 85329-85656 bp Feature: domain Description: IMPa_helical Location: 853 29-85656 bp Feature: domain Description: Peptidase_M60 Location: 86100-87030 bp Feature: domain Description: Peptidase_M60 Location: 86100-8703 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HipA_C (pfam07804), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: JAAVNI010000022.1 Pseudomonas aeruginosa strain MNPAB MNPAB_contig_22, whole genome shotgun sequence (93260 bp)
Overview 1 RT 1: 64563-72365 bp Neighborhood of RT #1 [64563, 72365] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P Feature: gene Location: 64563-66653 bp Feature: domain Description: HyuA Location: 64578-66633 bp Feature: domain Description: HyuA Location: 64 578-66633 bp Feature: gene Location: 66689-68434 bp Feature: domain Description: Hydantoinase_B Location: 66704-68288 bp Feature: domain Description: Hydantoinase_B Location: 66704 -68288 bp Feature: gene Location: 68735-70012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68996-69611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68996-69611 bp Feature: domain Description: GIIM Note: maturase Location: 69665-69893 bp Feature: domain Description: GIIM Note: maturase Location: 69665-69893 bp Feature: gene Location: 70608-71786 bp Feature: domain Description: Porin_O_P Location: 70833-71670 bp Feature: domain Description: Porin_O_P Location: 70833-71670 bp Feature: gene Location: 71934-72365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396)