myRT

myRT report for GCA_012103185.1_O.anthropi_ATCC_49188.fasta

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Seq: JAAVLS010000001.1 Ochrobactrum anthropi ATCC 49188 tig00000001, whole genome shotgun sequence (2941034 bp)
Overview 1 RT 1: 738663-743573 bp 2 RT 2: 1272324-1276806 bp 3 RT 3: 1312174-1315147 bp 4 RT 4: 1989153-1993293 bp Neighborhood of RT #1 [738663, 743573] RVT-UG12 Neighborhood of RT #2 [1272324, 1276814] RVT-GII GIIM PRK05764 Neighborhood of RT #3 [1312174, 1315170] COG2899 RVT-GII GIIM DUF2165 Neighborhood of RT #4 [1989153, 1993298] BglX GIIM RVT-GII SPOR Feature: gene Location: 738663-739574 bp Feature: gene Location: 739984-740160 bp Feature: gene Location: 740430-741374 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 740439-740595 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 740439-740595 bp Feature: gene Location: 742531-742971 bp Feature: gene Location: 743184-743573 bp Feature: gene Location: 1272324-1273208 bp Feature: gene Location: 1273469-1273702 bp Feature: gene Location: 1274030-1275019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274399-1275005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274399-1 275005 bp Feature: gene Location: 1275016-1275288 bp Feature: domain Description: GIIM Note: maturase Location: 1275064-1275199 bp Feature: domain Description: GIIM Note: maturase Location: 1 275064-1 2751 99 bp Feature: gene Location: 1275612-1276814 bp Feature: domain Description: PRK05764 Location: 1275621-1276806 bp Feature: domain Description: PRK05764 Location: 1 275621 -1 276806 bp Feature: gene Location: 1312174-1312575 bp Feature: domain Description: COG2899 Location: 1312177-1312534 bp Feature: domain Description: COG2899 Location: 1 31 21 77-1 31 2534 bp Feature: gene Location: 1312924-1313565 bp Feature: gene Location: 1313500-1314036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313506-1314022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 3506-1 31 4022 bp Feature: gene Location: 1314033-1314305 bp Feature: domain Description: GIIM Note: maturase Location: 1314081-1314216 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 4081 -1 31 421 6 bp Feature: gene Location: 1314334-1315170 bp Feature: domain Description: DUF2165 Location: 1314703-1315147 bp Feature: domain Description: DUF21 65 Location: 1 31 4703-1 31 51 47 bp Feature: gene Location: 1989153-1990085 bp Feature: domain Description: BglX Location: 1989162-1989969 bp Feature: domain Description: BglX Location: 1 9891 62-1 989969 bp Feature: gene Location: 1990498-1990770 bp Feature: domain Description: GIIM Note: maturase Location: 1990546-1990681 bp Feature: domain Description: GIIM Note: maturase Location: 1 990546-1 990681 bp Feature: gene Location: 1990767-1991303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990773-1991289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 990773-1 991 289 bp Feature: gene Location: 1991238-1992098 bp Feature: gene Location: 1992231-1993298 bp Feature: domain Description: SPOR Location: 1993056-1993293 bp Feature: domain Description: SPOR Location: 1 993056-1 993293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, RVT-GII, GIIM (pfam08388), PRK05764 (aspartate aminotransferase; Provisional), COG2899 (Uncharacterized protein ), DUF2165 (pfam09933), BglX (COG1472), SPOR (pfam05036)

Seq: JAAVLS010000002.1 Ochrobactrum anthropi ATCC 49188 tig00000002, whole genome shotgun sequence (1986527 bp)
Overview 1 RT 1: 1708688-1711315 bp Neighborhood of RT #1 [1708688, 1711315] organ_hyd_perox RVT-GII GIIM Feature: gene Location: 1708688-1709110 bp Feature: domain Description: organ_hyd_perox Location: 1708700-1709105 bp Feature: domain Description: organ_hyd_perox Location: 1708700-1709105 bp Feature: gene Location: 1709237-1710097 bp Feature: gene Location: 1710032-1710568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710038-1710554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710038-1710554 bp Feature: gene Location: 1710565-1710837 bp Feature: domain Description: GIIM Note: maturase Location: 1710613-1710748 bp Feature: domain Description: GIIM Note: maturase Location: 1710613-1710748 bp Feature: gene Location: 1711109-1711315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT organ_hyd_perox (TIGR03561), RVT-GII, GIIM (pfam08388)

Seq: JAAVLS010000003.1 Ochrobactrum anthropi ATCC 49188 tig00000030, whole genome shotgun sequence (204265 bp)
Overview 1 RT 1: 57105-60163 bp 2 RT 2: 103437-107590 bp 3 RT 3: 144913-147951 bp Neighborhood of RT #1 [57105, 60163] HTH_32 RVT-GII Neighborhood of RT #2 [103437, 107727] Transposase_20 COG3547 RVT-GII GIIM PHA02517 RVT-GII HTH_21 Neighborhood of RT #3 [144913, 148010] DUF736 RVT-GII GIIM FIDO Feature: gene Location: 57105-57575 bp Feature: domain Description: HTH_32 Location: 57210-57432 bp Feature: domain Description: HTH_3 2 Location: 57210-5743 2 bp Feature: gene Location: 57770-58021 bp Feature: gene Location: 58189-59238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58462-59149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58462-59149 bp Feature: gene Location: 59356-59709 bp Feature: gene Location: 59873-60163 bp Feature: gene Location: 103437-103871 bp Feature: domain Description: Transposase_20 Location: 103470-103695 bp Feature: domain Description: Transposase_20 Location: 103 470-103 695 bp Feature: gene Location: 104053-104472 bp Feature: domain Description: COG3547 Location: 104074-104452 bp Feature: domain Description: COG3 547 Location: 104074-104452 bp Feature: gene Location: 104651-106018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104657-104966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104657-104966 bp Feature: domain Description: GIIM Note: maturase Location: 105038-105266 bp Feature: domain Description: GIIM Note: maturase Location: 10503 8-105266 bp Feature: domain Description: PHA02517 Location: 105572-105989 bp Feature: domain Description: PHA02517 Location: 105572-105989 bp Feature: gene Location: 106108-106710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106381-106705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063 81-106705 bp Feature: gene Location: 106847-107239 bp Feature: gene Location: 107326-107727 bp Feature: domain Description: HTH_21 Location: 107431-107590 bp Feature: domain Description: HTH_21 Location: 10743 1-107590 bp Feature: gene Location: 144913-145170 bp Feature: domain Description: DUF736 Location: 144973-145126 bp Feature: domain Description: DUF73 6 Location: 144973 -145126 bp Feature: gene Location: 145928-146566 bp Feature: gene Location: 146504-147037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146510-147023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146510-147023 bp Feature: gene Location: 147034-147306 bp Feature: domain Description: GIIM Note: maturase Location: 147082-147217 bp Feature: domain Description: GIIM Note: maturase Location: 147082-147217 bp Feature: gene Location: 147555-148010 bp Feature: domain Description: FIDO Location: 147564-147951 bp Feature: domain Description: FIDO Location: 147564-147951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, Transposase_20 (pfam02371), COG3547 (Transposase ), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276), DUF736 (pfam05284), FIDO (COG2184)