myRT

myRT report for GCA_012103415.1_ASM1210341v1

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Seq: WLWU01000001.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017259.2670330, whole genome shotgun sequence (2670330 bp)
Overview 1 RT 1: 867912-871360 bp 2 RT 2: 1424124-1431718 bp Neighborhood of RT #1 [867912, 871482] HTH_ARAC AdaB RVT-UG4 DDE_Tnp_1 Neighborhood of RT #2 [1424124, 1431777] tynA IAT_beta RVT-GII GIIM tauD PRK06201 Feature: gene Location: 867912-868418 bp Feature: domain Description: HTH_ARAC Location: 868161-868404 bp Feature: domain Description: HTH_ARAC Location: 8681 61 -868404 bp Feature: gene Location: 868432-868932 bp Feature: domain Description: AdaB Location: 868450-868927 bp Feature: domain Description: AdaB Location: 868450-868927 bp Feature: gene Location: 869235-869513 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 869238-869475 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 869238-869475 bp Feature: gene Location: 869837-870589 bp Feature: gene Location: 871021-871482 bp Feature: domain Description: DDE_Tnp_1 Location: 871039-871360 bp Feature: domain Description: DDE_Tnp_1 Location: 871 039-871 360 bp Feature: gene Location: 1424124-1426037 bp Feature: domain Description: tynA Location: 1424130-1426017 bp Feature: domain Description: tynA Location: 1 4241 30-1 42601 7 bp Feature: gene Location: 1426177-1428267 bp Feature: domain Description: IAT_beta Location: 1426354-1426927 bp Feature: domain Description: IAT_beta Location: 1 426354-1 426927 bp Feature: gene Location: 1428534-1429328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428537-1428942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 428537-1 428942 bp Feature: domain Description: GIIM Note: maturase Location: 1429023-1429242 bp Feature: domain Description: GIIM Note: maturase Location: 1 429023-1 429242 bp Feature: gene Location: 1429944-1430792 bp Feature: domain Description: tauD Location: 1429950-1430772 bp Feature: domain Description: tauD Location: 1 429950-1 430772 bp Feature: gene Location: 1431079-1431777 bp Feature: domain Description: PRK06201 Location: 1431106-1431718 bp Feature: domain Description: PRK06201 Location: 1 431 1 06-1 431 71 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), AdaB (COG0350), RVT-UG4, DDE_Tnp_1 (pfam01609), tynA (PRK14696), IAT_beta (pfam11924), RVT-GII, GIIM (pfam08388), tauD (PRK09553), PRK06201 (hypothetical protein; Validated)

Seq: WLWU01000003.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017265.248013, whole genome shotgun sequence (248013 bp)
Overview 1 RT 1: 105890-109286 bp Neighborhood of RT #1 [105890, 109408] Radical_SAM SufS_like RVT-GII DUF772 DDE_Tnp_1 Feature: gene Location: 105890-107215 bp Feature: domain Description: Radical_SAM Location: 105998-106313 bp Feature: domain Description: Radical_SAM Location: 105998-106313 bp Feature: gene Location: 107250-107531 bp Feature: domain Description: SufS_like Location: 107256-107370 bp Feature: domain Description: SufS_like Location: 1072 56-107370 bp Feature: gene Location: 107537-107764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107543-107762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107543-107762 bp Feature: gene Location: 107803-107985 bp Feature: gene Location: 108062-109408 bp Feature: domain Description: DUF772 Location: 108215-108431 bp Feature: domain Description: DUF772 Location: 1082 15-108431 bp Feature: domain Description: DDE_Tnp_1 Location: 108866-109286 bp Feature: domain Description: DDE_Tnp_1 Location: 108866-1092 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Radical_SAM (pfam04055), SufS_like (cd06453), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1 (pfam01609)

Seq: WLWU01000012.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017282.153511, whole genome shotgun sequence (153511 bp)
Overview 1 RT 1: 149344-153410 bp Neighborhood of RT #1 [149344, 153415] HigB_toxin RVT-GII CaiA Feature: gene Location: 149344-149658 bp Feature: domain Description: HigB_toxin Location: 149425-149638 bp Feature: domain Description: HigB_toxin Location: 149425-14963 8 bp Feature: gene Location: 150175-150336 bp Feature: gene Location: 151174-152064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151243-151921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151243 -151921 bp Feature: gene Location: 152111-153415 bp Feature: domain Description: CaiA Location: 152273-153410 bp Feature: domain Description: CaiA Location: 152273 -153 410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB_toxin (pfam09907), RVT-GII, CaiA (COG1960)

Seq: WLWU01000014.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017294.493850, whole genome shotgun sequence (493850 bp)
Overview 1 RT 1: 238195-242615 bp 2 RT 2: 370458-373338 bp Neighborhood of RT #1 [238195, 242632] Cas2_I_II_III Cas_Cas1 RVT-CRISPR Csx1_III-U Pentapeptide Pentapeptide Pentapeptide_3 Neighborhood of RT #2 [370458, 373493] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 238195-238563 bp Feature: domain Description: Cas2_I_II_III Location: 238231-238417 bp Feature: domain Description: Cas2_I_II_III Location: 238231-2384 17 bp Feature: gene Location: 238560-239573 bp Feature: domain Description: Cas_Cas1 Location: 238578-239418 bp Feature: domain Description: Cas_Cas1 Location: 238578-2394 18 bp Feature: gene Location: 239689-240387 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 239764-240364 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 239764 -24 0364 bp Feature: gene Location: 241007-242200 bp Feature: domain Description: Csx1_III-U Location: 241082-241682 bp Feature: domain Description: Csx1_III-U Location: 24 1082-24 1682 bp Feature: gene Location: 242300-242632 bp Feature: domain Description: Pentapeptide Location: 242318-242417 bp Feature: domain Description: Pentapeptide Location: 24 2318-24 24 17 bp Feature: domain Description: Pentapeptide Location: 242432-242501 bp Feature: domain Description: Pentapeptide Location: 24 24 32-24 2501 bp Feature: domain Description: Pentapeptide_3 Location: 242510-242615 bp Feature: domain Description: Pentapeptide_3 Location: 24 2510-24 2615 bp Feature: gene Location: 370458-370646 bp Feature: gene Location: 370928-371152 bp Feature: gene Location: 371218-372057 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 371428-372028 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3714 28-372028 bp Feature: gene Location: 372050-373051 bp Feature: domain Description: Cas_Cas1 Location: 372059-372908 bp Feature: domain Description: Cas_Cas1 Location: 372059-372908 bp Feature: gene Location: 373035-373493 bp Feature: domain Description: Cas2_I_II_III Location: 373140-373338 bp Feature: domain Description: Cas2_I_II_III Location: 37314 0-373338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, Csx1_III-U (cl21570), Pentapeptide (pfam00805), Pentapeptide_3 (pfam13576)

Seq: WLWU01000017.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017297.65758, whole genome shotgun sequence (65758 bp)
Overview 1 RT 1: 15631-18111 bp Neighborhood of RT #1 [15631, 18521] DDE_Tnp_1 DUF772 RVT-GII SufS_like DUF772 Feature: gene Location: 15631-16092 bp Feature: domain Description: DDE_Tnp_1 Location: 15649-15970 bp Feature: domain Description: DDE_Tnp_1 Location: 15 649-15 970 bp Feature: gene Location: 16089-16976 bp Feature: domain Description: DUF772 Location: 16242-16458 bp Feature: domain Description: DUF772 Location: 16242-1645 8 bp Feature: gene Location: 17133-17501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17202-17499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17202-17499 bp Feature: gene Location: 17507-17665 bp Feature: domain Description: SufS_like Location: 17510-17627 bp Feature: domain Description: SufS_like Location: 175 10-17627 bp Feature: gene Location: 17742-18521 bp Feature: domain Description: DUF772 Location: 17895-18111 bp Feature: domain Description: DUF772 Location: 17895 -18111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DUF772 (pfam05598), RVT-GII, SufS_like (cd06453)

Seq: WLWU01000018.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-6 scf7180000017299.96268, whole genome shotgun sequence (96268 bp)
Overview 1 RT 1: 67574-71753 bp Neighborhood of RT #1 [67574, 71753] HipA RVT-GII GIIM HNHc Feature: gene Location: 67574-68836 bp Feature: domain Description: HipA Location: 67658-68825 bp Feature: domain Description: HipA Location: 6 76 58-6 8825 bp Feature: gene Location: 68896-69321 bp Feature: gene Location: 69601-71349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69883-70561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 9883-7056 1 bp Feature: domain Description: GIIM Note: maturase Location: 70627-70837 bp Feature: domain Description: GIIM Note: maturase Location: 706 27-70837 bp Feature: domain Description: HNHc Note: nucleases Location: 71119-71251 bp Feature: domain Description: HNHc Note: nucleases Location: 71119-71251 bp Feature: gene Location: 71377-71577 bp Feature: gene Location: 71610-71753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA (COG3550), RVT-GII, GIIM (pfam08388), HNHc (smart00507)