myRT

myRT report for GCA_012103455.1_ASM1210345v1

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Seq: WLWT01000001.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-5 scf7180000017258.4699109, whole genome shotgun sequence (4699109 bp)
Overview 1 RT 1: 6458-8396 bp 2 RT 2: 835378-838378 bp 3 RT 3: 925697-928778 bp 4 RT 4: 1934425-1937410 bp 5 RT 5: 1940841-1945069 bp 6 RT 6: 2191112-2194240 bp 7 RT 7: 2534466-2539224 bp 8 RT 8: 2704710-2708514 bp 9 RT 9: 3085424-3090737 bp 10 RT 10: 3271424-3276363 bp 11 RT 11: 3368064-3371068 bp 12 RT 12: 3427191-3430317 bp 13 RT 13: 3574202-3576460 bp 14 RT 14: 3629298-3632423 bp 15 RT 15: 4345743-4348616 bp Neighborhood of RT #1 [6458, 8413] RVT-GII LptE Neighborhood of RT #2 [835378, 838378] RVT-GII DDE_Tnp_ISL3 Neighborhood of RT #3 [925697, 928778] RVT-GII Neighborhood of RT #4 [1934425, 1937415] RVT-GII GIIM HicB YcfA Neighborhood of RT #5 [1940841, 1945080] DDE_3 HTH_28 RVT-GII GIIM COG4634 COG2442 Neighborhood of RT #6 [2191112, 2194240] dam RVT-GII Neighborhood of RT #7 [2534466, 2539224] RVT-GII Neighborhood of RT #8 [2704710, 2708514] HicB HicA_toxin RVT-GII GIIM DUF4160 Neighborhood of RT #9 [3085424, 3090796] Glyco_tranf_GTA_type Sulfotransfer_1 COG4627 RVT-GII Methyltransf_11 PC_cytidylyltransferase Neighborhood of RT #10 [3271424, 3276363] HTH_XRE ImmA RVT-GII Neighborhood of RT #11 [3368064, 3371068] RelE_StbE RVT-GII Neighborhood of RT #12 [3427191, 3430343] RVT-GII NT_KNTase_like Neighborhood of RT #13 [3574202, 3576492] RVT-GII ParE Neighborhood of RT #14 [3629298, 3632423] upstrm_HI1419 RVT-GII Neighborhood of RT #15 [4345743, 4348660] RVT-GII GIIM RVT-GII SymE_toxin PHA02517 Feature: gene Location: 6458-6724 bp Feature: gene Location: 6832-6978 bp Feature: gene Location: 7042-7200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7051-7198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7051 -71 98 bp Feature: gene Location: 7330-7518 bp Feature: gene Location: 7916-8413 bp Feature: domain Description: LptE Location: 7931-8396 bp Feature: domain Description: LptE Location: 7931 -8396 bp Feature: gene Location: 835378-835515 bp Feature: gene Location: 835766-836023 bp Feature: gene Location: 836111-836959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836219-836837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83621 9-836837 bp Feature: gene Location: 837487-837936 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 837505-837886 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 837505-837886 bp Feature: gene Location: 838160-838378 bp Feature: gene Location: 925697-925960 bp Feature: gene Location: 926145-926522 bp Feature: gene Location: 927360-927929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927468-927927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 927468-927927 bp Feature: gene Location: 928017-928274 bp Feature: gene Location: 928512-928778 bp Feature: gene Location: 1934425-1934643 bp Feature: gene Location: 1934801-1934965 bp Feature: gene Location: 1935631-1936923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1935871-1936459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 935871 -1 936459 bp Feature: domain Description: GIIM Note: maturase Location: 1936528-1936732 bp Feature: domain Description: GIIM Note: maturase Location: 1 936528-1 936732 bp Feature: gene Location: 1937009-1937224 bp Feature: domain Description: HicB Location: 1937012-1937201 bp Feature: domain Description: HicB Location: 1 93701 2-1 937201 bp Feature: gene Location: 1937227-1937415 bp Feature: domain Description: YcfA Location: 1937230-1937410 bp Feature: domain Description: YcfA Location: 1 937230-1 93741 0 bp Feature: gene Location: 1940841-1941482 bp Feature: domain Description: DDE_3 Location: 1940958-1941360 bp Feature: domain Description: DDE_3 Location: 1 940958-1 941 360 bp Feature: gene Location: 1941550-1941867 bp Feature: domain Description: HTH_28 Location: 1941604-1941760 bp Feature: domain Description: HTH_28 Location: 1 941 604-1 941 760 bp Feature: gene Location: 1943102-1944310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943342-1943930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 943342-1 943930 bp Feature: domain Description: GIIM Note: maturase Location: 1943999-1944203 bp Feature: domain Description: GIIM Note: maturase Location: 1 943999-1 944203 bp Feature: gene Location: 1944485-1944859 bp Feature: domain Description: COG4634 Location: 1944488-1944818 bp Feature: domain Description: COG4634 Location: 1 944488-1 94481 8 bp Feature: gene Location: 1944856-1945080 bp Feature: domain Description: COG2442 Location: 1944865-1945069 bp Feature: domain Description: COG2442 Location: 1 944865-1 945069 bp Feature: gene Location: 2191112-2192023 bp Feature: domain Description: dam Location: 2191127-2191937 bp Feature: domain Description: dam Location: 21 91 1 27-21 91 937 bp Feature: gene Location: 2192020-2192166 bp Feature: gene Location: 2192800-2193084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192911-2193079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 9291 1 -21 93079 bp Feature: gene Location: 2193109-2193273 bp Feature: gene Location: 2193923-2194240 bp Feature: gene Location: 2534466-2534603 bp Feature: gene Location: 2534969-2535721 bp Feature: gene Location: 2537363-2537914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537603-2537903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537603-2537903 bp Feature: gene Location: 2537937-2538116 bp Feature: gene Location: 2538655-2539224 bp Feature: gene Location: 2704710-2704925 bp Feature: domain Description: HicB Location: 2704713-2704914 bp Feature: domain Description: HicB Location: 270471 3-270491 4 bp Feature: gene Location: 2704933-2705082 bp Feature: domain Description: HicA_toxin Location: 2705026-2705077 bp Feature: domain Description: HicA_toxin Location: 2705026-2705077 bp Feature: gene Location: 2705774-2706982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2706014-2706602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270601 4-2706602 bp Feature: domain Description: GIIM Note: maturase Location: 2706671-2706875 bp Feature: domain Description: GIIM Note: maturase Location: 2706671 -2706875 bp Feature: gene Location: 2707388-2707636 bp Feature: domain Description: DUF4160 Location: 2707415-2707598 bp Feature: domain Description: DUF41 60 Location: 270741 5-2707598 bp Feature: gene Location: 2708038-2708514 bp Feature: gene Location: 3085424-3086707 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 3085454-3085829 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 3085454-3085829 bp Feature: gene Location: 3086751-3088142 bp Feature: domain Description: Sulfotransfer_1 Location: 3087027-3087330 bp Feature: domain Description: Sulfotransfer_1 Location: 3087027-3087330 bp Feature: domain Description: COG4627 Location: 3087633-3088128 bp Feature: domain Description: COG4627 Location: 3087633-30881 28 bp Feature: gene Location: 3088346-3088753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3088424-3088715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3088424-308871 5 bp Feature: gene Location: 3089245-3090021 bp Feature: domain Description: Methyltransf_11 Location: 3089380-3089656 bp Feature: domain Description: Methyltransf_1 1 Location: 3089380-3089656 bp Feature: gene Location: 3090074-3090796 bp Feature: domain Description: PC_cytidylyltransferase Location: 3090077-3090737 bp Feature: domain Description: PC_cytidylyltransferase Location: 3090077-3090737 bp Feature: gene Location: 3271424-3272572 bp Feature: domain Description: HTH_XRE Location: 3271484-3271613 bp Feature: domain Description: HTH_XRE Location: 3271 484-3271 61 3 bp Feature: domain Description: ImmA Location: 3271850-3272486 bp Feature: domain Description: ImmA Location: 3271 850-3272486 bp Feature: gene Location: 3273249-3273428 bp Feature: gene Location: 3273511-3273870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273619-3273865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327361 9-3273865 bp Feature: gene Location: 3273958-3274215 bp Feature: gene Location: 3275917-3276363 bp Feature: gene Location: 3368064-3368453 bp Feature: gene Location: 3368712-3368993 bp Feature: domain Description: RelE_StbE Location: 3368829-3368976 bp Feature: domain Description: RelE_StbE Location: 3368829-3368976 bp Feature: gene Location: 3369156-3369902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3369162-3369486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33691 62-3369486 bp Feature: gene Location: 3370321-3370539 bp Feature: gene Location: 3370541-3371068 bp Feature: gene Location: 3427191-3427682 bp Feature: gene Location: 3428744-3428923 bp Feature: gene Location: 3428946-3429365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3429054-3429357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3429054-3429357 bp Feature: gene Location: 3429453-3429710 bp Feature: gene Location: 3430038-3430343 bp Feature: domain Description: NT_KNTase_like Location: 3430062-3430317 bp Feature: domain Description: NT_KNTase_like Location: 3430062-343031 7 bp Feature: gene Location: 3574202-3574375 bp Feature: gene Location: 3574892-3575071 bp Feature: gene Location: 3575094-3575513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575202-3575505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3575202-3575505 bp Feature: gene Location: 3575601-3575858 bp Feature: gene Location: 3576193-3576492 bp Feature: domain Description: ParE Location: 3576202-3576460 bp Feature: domain Description: ParE Location: 3576202-3576460 bp Feature: gene Location: 3629298-3629597 bp Feature: domain Description: upstrm_HI1419 Location: 3629310-3629586 bp Feature: domain Description: upstrm_HI1 41 9 Location: 362931 0-3629586 bp Feature: gene Location: 3630393-3630674 bp Feature: gene Location: 3630916-3631179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631006-3631174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631 006-3631 1 74 bp Feature: gene Location: 3631402-3631857 bp Feature: gene Location: 3632064-3632423 bp Feature: gene Location: 4345743-4345961 bp Feature: gene Location: 4346544-4346879 bp Feature: gene Location: 4346960-4347565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4346963-4347128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4346963-43471 28 bp Feature: domain Description: GIIM Note: maturase Location: 4347173-4347374 bp Feature: domain Description: GIIM Note: maturase Location: 43471 73-4347374 bp Feature: gene Location: 4347600-4347974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347606-4347969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347606-4347969 bp Feature: gene Location: 4347958-4348239 bp Feature: domain Description: SymE_toxin Location: 4348084-4348216 bp Feature: domain Description: SymE_toxin Location: 4348084-434821 6 bp Feature: gene Location: 4348403-4348660 bp Feature: domain Description: PHA02517 Location: 4348433-4348616 bp Feature: domain Description: PHA0251 7 Location: 4348433-434861 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LptE (pfam04390), DDE_Tnp_ISL3 (pfam01610), GIIM (pfam08388), HicB (pfam05534), YcfA (COG1724), DDE_3 (pfam13358), HTH_28 (pfam13518), COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), COG2442 (Uncharacterized conserved protein, DUF433 family )
dam (TIGR00571), HicA_toxin (pfam07927), DUF4160 (pfam13711), Glyco_tranf_GTA_type (cl11394), Sulfotransfer_1 (pfam00685), COG4627 (Predicted SAM-depedendent methyltransferase ), Methyltransf_11 (pfam08241), PC_cytidylyltransferase (cd02523), HTH_XRE (smart00530), ImmA (COG2856)
RelE_StbE (TIGR02385), NT_KNTase_like (cd05403), ParE (COG3668), upstrm_HI1419 (TIGR02683), SymE_toxin (pfam08845), PHA02517 (putative transposase OrfB; Reviewed)

Seq: WLWT01000002.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-5 scf7180000017279.1099006, whole genome shotgun sequence (1099006 bp)
Overview 1 RT 1: 4073-8344 bp 2 RT 2: 49118-51150 bp 3 RT 3: 906277-908770 bp Neighborhood of RT #1 [4073, 8451] COG3415 NikR RVT-GII GIIM HTH_33 DDE_3 HTH_28 Neighborhood of RT #2 [49118, 51152] RVT-GII DUF2283 HigB Neighborhood of RT #3 [906277, 908910] BrnT_toxin RVT-GII HicB Feature: gene Location: 4073-4390 bp Feature: domain Description: COG3415 Location: 4115-4370 bp Feature: domain Description: COG3415 Location: 4115-4370 bp Feature: gene Location: 4905-5147 bp Feature: domain Description: NikR Location: 4911-5043 bp Feature: domain Description: NikR Location: 4911-5043 bp Feature: gene Location: 5844-7127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084-6672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084-6672 bp Feature: domain Description: GIIM Note: maturase Location: 6741-6945 bp Feature: domain Description: GIIM Note: maturase Location: 6741-6945 bp Feature: gene Location: 7426-8094 bp Feature: domain Description: HTH_33 Location: 7432-7528 bp Feature: domain Description: HTH_33 Location: 7432 -752 8 bp Feature: domain Description: DDE_3 Location: 7570-7972 bp Feature: domain Description: DDE_3 Location: 7570-7972 bp Feature: gene Location: 8134-8451 bp Feature: domain Description: HTH_28 Location: 8188-8344 bp Feature: domain Description: HTH_2 8 Location: 8188-8344 bp Feature: gene Location: 49118-49522 bp Feature: gene Location: 49560-49706 bp Feature: gene Location: 49770-49928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49779-49926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49779-4992 6 bp Feature: gene Location: 50556-50744 bp Feature: domain Description: DUF2283 Location: 50562-50706 bp Feature: domain Description: DUF2 2 83 Location: 50562 -50706 bp Feature: gene Location: 51003-51152 bp Feature: domain Description: HigB Location: 51009-51150 bp Feature: domain Description: HigB Location: 51009-51150 bp Feature: gene Location: 906277-906480 bp Feature: gene Location: 906467-906739 bp Feature: domain Description: BrnT_toxin Location: 906482-906716 bp Feature: domain Description: BrnT_toxin Location: 906482 -906716 bp Feature: gene Location: 907150-907998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907258-907876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9072 58-907876 bp Feature: gene Location: 908086-908343 bp Feature: gene Location: 908671-908910 bp Feature: domain Description: HicB Location: 908680-908770 bp Feature: domain Description: HicB Location: 908680-908770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), NikR (COG0864), RVT-GII, GIIM (pfam08388), HTH_33 (pfam13592), DDE_3 (pfam13358), HTH_28 (pfam13518), DUF2283 (pfam10049), HigB (COG4680), BrnT_toxin (pfam04365)
HicB (pfam05534)

Seq: WLWT01000003.1 Gammaproteobacteria bacterium isolate MH-Pat-all_autometa_1-5 scf7180000017292.1223153, whole genome shotgun sequence (1223153 bp)
Overview 1 RT 1: 127551-133803 bp 2 RT 2: 151266-155262 bp 3 RT 3: 1046114-1049260 bp 4 RT 4: 1215854-1220125 bp Neighborhood of RT #1 [127551, 133803] CPBP PolY_Pol_IV_kappa RVT-GII RVT-GII RVT-GII Neighborhood of RT #2 [151266, 155262] DUF4372 DDE_Tnp_1 RVT-GII Neighborhood of RT #3 [1046114, 1049274] RVT-GII DUF2796 Fur Neighborhood of RT #4 [1215854, 1220232] COG3415 NikR RVT-GII GIIM HTH_33 DDE_3 HTH_28 Feature: gene Location: 127551-128486 bp Feature: domain Description: CPBP Location: 127971-128313 bp Feature: domain Description: CPBP Location: 127971-1283 13 bp Feature: gene Location: 128467-129606 bp Feature: domain Description: PolY_Pol_IV_kappa Location: 128470-129466 bp Feature: domain Description: PolY_Pol_IV_kappa Location: 128470-129466 bp Feature: gene Location: 130071-130601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130302-130362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 03 02-13 03 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130362-130545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 03 62-13 0545 bp Feature: gene Location: 130720-130989 bp Feature: gene Location: 131014-131154 bp Feature: gene Location: 131325-131552 bp Feature: gene Location: 132449-132628 bp Feature: gene Location: 132651-133070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132759-133062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 2759-13 3 062 bp Feature: gene Location: 133158-133415 bp Feature: gene Location: 133666-133803 bp Feature: gene Location: 151266-152417 bp Feature: domain Description: DUF4372 Location: 151275-151491 bp Feature: domain Description: DUF43 72 Location: 151275-151491 bp Feature: domain Description: DDE_Tnp_1 Location: 151629-152250 bp Feature: domain Description: DDE_Tnp_1 Location: 151629-152250 bp Feature: gene Location: 152653-152784 bp Feature: gene Location: 152853-153059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152862-152991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152862-152991 bp Feature: gene Location: 154680-154925 bp Feature: gene Location: 154927-155262 bp Feature: gene Location: 1046114-1046404 bp Feature: gene Location: 1046446-1046790 bp Feature: gene Location: 1046923-1047876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046953-1047352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046953 -10473 52 bp Feature: gene Location: 1048193-1048816 bp Feature: domain Description: DUF2796 Location: 1048292-1048790 bp Feature: domain Description: DUF2796 Location: 1048292-1048790 bp Feature: gene Location: 1048813-1049274 bp Feature: domain Description: Fur Location: 1048843-1049260 bp Feature: domain Description: Fur Location: 1048843 -1049260 bp Feature: gene Location: 1215854-1216171 bp Feature: domain Description: COG3415 Location: 1215896-1216151 bp Feature: domain Description: COG3 415 Location: 1215896-1216151 bp Feature: gene Location: 1216686-1216928 bp Feature: domain Description: NikR Location: 1216692-1216824 bp Feature: domain Description: NikR Location: 1216692-1216824 bp Feature: gene Location: 1217625-1218908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1217865-1218453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1217865-1218453 bp Feature: domain Description: GIIM Note: maturase Location: 1218522-1218726 bp Feature: domain Description: GIIM Note: maturase Location: 1218522-1218726 bp Feature: gene Location: 1219207-1219875 bp Feature: domain Description: HTH_33 Location: 1219213-1219309 bp Feature: domain Description: HTH_3 3 Location: 1219213 -12193 09 bp Feature: domain Description: DDE_3 Location: 1219351-1219753 bp Feature: domain Description: DDE_3 Location: 12193 51-1219753 bp Feature: gene Location: 1219915-1220232 bp Feature: domain Description: HTH_28 Location: 1219969-1220125 bp Feature: domain Description: HTH_28 Location: 1219969-1220125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CPBP, PolY_Pol_IV_kappa (cd03586), RVT-GII, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), DUF2796 (pfam10986), Fur (COG0735), COG3415 (Transposase ), NikR (COG0864), GIIM (pfam08388)
HTH_33 (pfam13592), DDE_3 (pfam13358), HTH_28 (pfam13518)