myRT

myRT report for GCA_012184275.1_ASM1218427v1

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Seq: MU034336.1 Bacillus paranthracis strain A2 genomic scaffold scaffold1, whole genome shotgun sequence (4771373 bp)
Overview 1 RT 1: 1577489-1582549 bp 2 RT 2: 1671025-1675016 bp 3 RT 3: 2007004-2017787 bp 4 RT 4: 2263958-2269621 bp 5 RT 5: 2336197-2342472 bp 6 RT 6: 3719901-3725157 bp 7 RT 7: 4472742-4478524 bp 8 RT 8: 4514137-4518329 bp Neighborhood of RT #1 [1577489, 1582569] nitrilase_5 RVT-GII HNHc mtnK Neighborhood of RT #2 [1671025, 1675114] amiF RVT-GII HNHc amiF YugN Neighborhood of RT #3 [2007004, 2018017] CcdC B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #4 [2263958, 2269653] IscR IDEAL RVT_N RVT-GII GIIM stp Neighborhood of RT #5 [2336197, 2342666] YbaK_EbsC GrpB RVT_N RVT-GII GIIM HTH_3 TPR Hydrolase_4 Neighborhood of RT #6 [3719901, 3725273] AsnB RVT-GII HNHc asn_synth_AEB PP2C_2 Neighborhood of RT #7 [4472742, 4478637] Collagen_bind SpaA CollagenBindB COG4932 RVT-GII HNHc Big_8 Neighborhood of RT #8 [4514137, 4518329] TTHA1623-like_MBL-fold RVT-GII HNHc Feature: gene Location: 1577489-1578295 bp Feature: domain Description: nitrilase_5 Location: 1577630-1578281 bp Feature: domain Description: nitrilase_5 Location: 1 577630-1 578281 bp Feature: gene Location: 1578442-1578618 bp Feature: gene Location: 1579011-1580843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1579311-1580016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57931 1 -1 58001 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1580595-1580727 bp Feature: domain Description: HNHc Note: nucleases Location: 1 580595-1 580727 bp Feature: gene Location: 1580944-1581093 bp Feature: gene Location: 1581388-1582569 bp Feature: domain Description: mtnK Location: 1581391-1582549 bp Feature: domain Description: mtnK Location: 1 581 391 -1 582549 bp Feature: gene Location: 1671025-1671414 bp Feature: domain Description: amiF Location: 1671028-1671400 bp Feature: domain Description: amiF Location: 1 671 028-1 671 400 bp Feature: gene Location: 1671561-1671737 bp Feature: gene Location: 1672130-1673962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1672430-1673135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 672430-1 6731 35 bp Feature: domain Description: HNHc Note: nucleases Location: 1673714-1673846 bp Feature: domain Description: HNHc Note: nucleases Location: 1 67371 4-1 673846 bp Feature: gene Location: 1674079-1674702 bp Feature: domain Description: amiF Location: 1674082-1674697 bp Feature: domain Description: amiF Location: 1 674082-1 674697 bp Feature: gene Location: 1674749-1675114 bp Feature: domain Description: YugN Location: 1674767-1675016 bp Feature: domain Description: YugN Location: 1 674767-1 67501 6 bp Feature: gene Location: 2007004-2007510 bp Feature: domain Description: CcdC Location: 2007013-2007475 bp Feature: domain Description: CcdC Location: 200701 3-2007475 bp Feature: gene Location: 2007574-2008854 bp Feature: domain Description: B_ant_repeat Location: 2007652-2007763 bp Feature: domain Description: B_ant_repeat Location: 2007652-2007763 bp Feature: domain Description: B_ant_repeat Location: 2008003-2008159 bp Feature: domain Description: B_ant_repeat Location: 2008003-20081 59 bp Feature: domain Description: B_ant_repeat Location: 2008402-2008558 bp Feature: domain Description: B_ant_repeat Location: 2008402-2008558 bp Feature: gene Location: 2009556-2011484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009877-2010612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009877-201 061 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2011203-2011368 bp Feature: domain Description: HNHc Note: nucleases Location: 201 1 203-201 1 368 bp Feature: gene Location: 2011653-2017226 bp Feature: domain Description: B_ant_repeat Location: 2011659-2011788 bp Feature: domain Description: B_ant_repeat Location: 201 1 659-201 1 788 bp Feature: domain Description: B_ant_repeat Location: 2012028-2012181 bp Feature: domain Description: B_ant_repeat Location: 201 2028-201 21 81 bp Feature: domain Description: B_ant_repeat Location: 2012424-2012580 bp Feature: domain Description: B_ant_repeat Location: 201 2424-201 2580 bp Feature: domain Description: B_ant_repeat Location: 2012820-2012976 bp Feature: domain Description: B_ant_repeat Location: 201 2820-201 2976 bp Feature: domain Description: B_ant_repeat Location: 2013216-2013372 bp Feature: domain Description: B_ant_repeat Location: 201 321 6-201 3372 bp Feature: domain Description: B_ant_repeat Location: 2013612-2013765 bp Feature: domain Description: B_ant_repeat Location: 201 361 2-201 3765 bp Feature: domain Description: B_ant_repeat Location: 2014008-2014164 bp Feature: domain Description: B_ant_repeat Location: 201 4008-201 41 64 bp Feature: domain Description: B_ant_repeat Location: 2014404-2014560 bp Feature: domain Description: B_ant_repeat Location: 201 4404-201 4560 bp Feature: domain Description: B_ant_repeat Location: 2014800-2014956 bp Feature: domain Description: B_ant_repeat Location: 201 4800-201 4956 bp Feature: domain Description: B_ant_repeat Location: 2015196-2015349 bp Feature: domain Description: B_ant_repeat Location: 201 51 96-201 5349 bp Feature: domain Description: B_ant_repeat Location: 2015592-2015748 bp Feature: domain Description: B_ant_repeat Location: 201 5592-201 5748 bp Feature: domain Description: B_ant_repeat Location: 2015988-2016144 bp Feature: domain Description: B_ant_repeat Location: 201 5988-201 61 44 bp Feature: domain Description: B_ant_repeat Location: 2016384-2016540 bp Feature: domain Description: B_ant_repeat Location: 201 6384-201 6540 bp Feature: domain Description: B_ant_repeat Location: 2016780-2016933 bp Feature: domain Description: B_ant_repeat Location: 201 6780-201 6933 bp Feature: gene Location: 2017640-2018017 bp Feature: domain Description: B_ant_repeat Location: 2017649-2017787 bp Feature: domain Description: B_ant_repeat Location: 201 7649-201 7787 bp Feature: gene Location: 2263958-2264371 bp Feature: domain Description: IscR Location: 2263961-2264354 bp Feature: domain Description: IscR Location: 2263961 -2264354 bp Feature: gene Location: 2264488-2264823 bp Feature: domain Description: IDEAL Location: 2264692-2264788 bp Feature: domain Description: IDEAL Location: 2264692-2264788 bp Feature: gene Location: 2265614-2267260 bp Feature: RT Description: RVT_N Location: 2265656-2265893 bp Feature: RT Description: RVT_N Location: 2265656-2265893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265947-2266607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265947-2266607 bp Feature: domain Description: GIIM Note: maturase Location: 2266676-2266907 bp Feature: domain Description: GIIM Note: maturase Location: 2266676-2266907 bp Feature: gene Location: 2267392-2267556 bp Feature: gene Location: 2268334-2269653 bp Feature: domain Description: stp Location: 2268421-2269621 bp Feature: domain Description: stp Location: 2268421 -2269621 bp Feature: gene Location: 2336197-2336673 bp Feature: domain Description: YbaK_EbsC Location: 2336215-2336665 bp Feature: domain Description: YbaK_EbsC Location: 233621 5-2336665 bp Feature: gene Location: 2337260-2337790 bp Feature: domain Description: GrpB Location: 2337272-2337746 bp Feature: domain Description: GrpB Location: 2337272-2337746 bp Feature: gene Location: 2338507-2340153 bp Feature: RT Description: RVT_N Location: 2338549-2338786 bp Feature: RT Description: RVT_N Location: 2338549-2338786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338840-2339500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338840-2339500 bp Feature: domain Description: GIIM Note: maturase Location: 2339569-2339800 bp Feature: domain Description: GIIM Note: maturase Location: 2339569-2339800 bp Feature: gene Location: 2340513-2341637 bp Feature: domain Description: HTH_3 Location: 2340543-2340705 bp Feature: domain Description: HTH_3 Location: 2340543-2340705 bp Feature: domain Description: TPR Location: 2341269-2341392 bp Feature: domain Description: TPR Location: 2341 269-2341 392 bp Feature: gene Location: 2341647-2342666 bp Feature: domain Description: Hydrolase_4 Location: 2341812-2342472 bp Feature: domain Description: Hydrolase_4 Location: 2341 81 2-2342472 bp Feature: gene Location: 3719901-3720092 bp Feature: domain Description: AsnB Location: 3719904-3720081 bp Feature: domain Description: AsnB Location: 371 9904-3720081 bp Feature: gene Location: 3720239-3720415 bp Feature: gene Location: 3720808-3722640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3721108-3721813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3721 1 08-3721 81 3 bp Feature: domain Description: HNHc Note: nucleases Location: 3722392-3722524 bp Feature: domain Description: HNHc Note: nucleases Location: 3722392-3722524 bp Feature: gene Location: 3722721-3724403 bp Feature: domain Description: asn_synth_AEB Location: 3722751-3724179 bp Feature: domain Description: asn_synth_AEB Location: 3722751 -37241 79 bp Feature: gene Location: 3724446-3725273 bp Feature: domain Description: PP2C_2 Location: 3724818-3725157 bp Feature: domain Description: PP2C_2 Location: 372481 8-37251 57 bp Feature: gene Location: 4472742-4473206 bp Feature: gene Location: 4473295-4475346 bp Feature: domain Description: Collagen_bind Location: 4473301-4473610 bp Feature: domain Description: Collagen_bind Location: 4473301 -447361 0 bp Feature: domain Description: SpaA Location: 4473748-4473949 bp Feature: domain Description: SpaA Location: 4473748-4473949 bp Feature: domain Description: CollagenBindB Location: 4473997-4474243 bp Feature: domain Description: CollagenBindB Location: 4473997-4474243 bp Feature: domain Description: COG4932 Location: 4474852-4475344 bp Feature: domain Description: COG4932 Location: 4474852-4475344 bp Feature: gene Location: 4475526-4477358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4475826-4476531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4475826-4476531 bp Feature: domain Description: HNHc Note: nucleases Location: 4477110-4477242 bp Feature: domain Description: HNHc Note: nucleases Location: 44771 1 0-4477242 bp Feature: gene Location: 4477751-4477927 bp Feature: gene Location: 4478074-4478637 bp Feature: domain Description: Big_8 Location: 4478275-4478524 bp Feature: domain Description: Big_8 Location: 4478275-4478524 bp Feature: gene Location: 4514137-4514271 bp Feature: gene Location: 4514720-4515133 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 4514723-4515119 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 451 4723-451 51 1 9 bp Feature: gene Location: 4515373-4517205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4515673-4516378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 5673-451 6378 bp Feature: domain Description: HNHc Note: nucleases Location: 4516957-4517089 bp Feature: domain Description: HNHc Note: nucleases Location: 451 6957-451 7089 bp Feature: gene Location: 4517598-4517774 bp Feature: gene Location: 4518180-4518329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nitrilase_5 (cd07583), RVT-GII, HNHc (smart00507), mtnK (PRK09550), amiF (PRK13287), YugN (pfam08868), CcdC (COG4846), B_ant_repeat (TIGR01451), IscR (TIGR02010), IDEAL (smart00914)
RVT_N (pfam13655), GIIM (pfam08388), stp (TIGR00814), YbaK_EbsC (TIGR00011), GrpB (pfam04229), HTH_3 (pfam01381), TPR (smart00028), Hydrolase_4 (pfam12146), AsnB (COG0367), asn_synth_AEB (TIGR01536)
PP2C_2 (pfam13672), Collagen_bind (pfam05737), SpaA (pfam17802), CollagenBindB (cl15753), COG4932 (Uncharacterized surface anchored protein ), Big_8 (pfam17961), TTHA1623-like_MBL-fold (cd16322)

Seq: MU034338.1 Bacillus paranthracis strain A2 genomic scaffold scaffold11, whole genome shotgun sequence (14035 bp)
Overview 1 RT 1: 3749-10355 bp Neighborhood of RT #1 [3749, 10396] ManC nuc_hydro RVT_N RVT-GII GIIM NlpD ParM_like Feature: gene Location: 3749-4321 bp Feature: domain Description: ManC Location: 3941-4307 bp Feature: domain Description: ManC Location: 3941-4307 bp Feature: gene Location: 4562-5533 bp Feature: domain Description: nuc_hydro Location: 4598-5504 bp Feature: domain Description: nuc_hydro Location: 4598-5504 bp Feature: gene Location: 6253-7899 bp Feature: RT Description: RVT_N Location: 6295-6532 bp Feature: RT Description: RVT_N Location: 62 95-6532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6586-7246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6586-72 46 bp Feature: domain Description: GIIM Note: maturase Location: 7315-7546 bp Feature: domain Description: GIIM Note: maturase Location: 7315-7546 bp Feature: gene Location: 8093-8659 bp Feature: domain Description: NlpD Location: 8297-8648 bp Feature: domain Description: NlpD Location: 82 97-8648 bp Feature: gene Location: 9230-10396 bp Feature: domain Description: ParM_like Location: 9296-10355 bp Feature: domain Description: ParM_like Location: 92 96-10355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), nuc_hydro (cl00226), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NlpD (COG0739), ParM_like (cd10227)

Seq: MU034358.1 Bacillus paranthracis strain A2 genomic scaffold scaffold3, whole genome shotgun sequence (283835 bp)
Overview 1 RT 1: 115200-120092 bp 2 RT 2: 183476-188285 bp 3 RT 3: 192304-201419 bp 4 RT 4: 255599-264388 bp Neighborhood of RT #1 [115200, 120092] MTS RVT-GII HNHc Neighborhood of RT #2 [183476, 188290] beta_clamp RVT-GII COG4712 Neighborhood of RT #3 [192304, 201419] rpsA nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #4 [255599, 264388] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 115200-115427 bp Feature: gene Location: 115443-116564 bp Feature: domain Description: MTS Location: 115539-115902 bp Feature: domain Description: MTS Location: 11553 9-115902 bp Feature: gene Location: 116709-118637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117030-117765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11703 0-117765 bp Feature: domain Description: HNHc Note: nucleases Location: 118356-118521 bp Feature: domain Description: HNHc Note: nucleases Location: 1183 56-118521 bp Feature: gene Location: 119520-119663 bp Feature: gene Location: 119679-120092 bp Feature: gene Location: 183476-184588 bp Feature: domain Description: beta_clamp Location: 183479-184583 bp Feature: domain Description: beta_clamp Location: 183 479-184583 bp Feature: gene Location: 184669-185196 bp Feature: gene Location: 185274-187175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185592-186294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185592-186294 bp Feature: gene Location: 187317-187505 bp Feature: gene Location: 187934-188290 bp Feature: domain Description: COG4712 Location: 187943-188285 bp Feature: domain Description: COG4712 Location: 187943 -188285 bp Feature: gene Location: 192304-193287 bp Feature: domain Description: rpsA Location: 192571-193108 bp Feature: domain Description: rpsA Location: 192571-193 108 bp Feature: gene Location: 193881-194852 bp Feature: domain Description: nuc_hydro Location: 193917-194823 bp Feature: domain Description: nuc_hydro Location: 193 917-194823 bp Feature: gene Location: 195572-197218 bp Feature: RT Description: RVT_N Location: 195614-195851 bp Feature: RT Description: RVT_N Location: 195614-195851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195905-196565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195905-196565 bp Feature: domain Description: GIIM Note: maturase Location: 196634-196865 bp Feature: domain Description: GIIM Note: maturase Location: 19663 4-196865 bp Feature: gene Location: 197431-200931 bp Feature: domain Description: TraG-D_C Location: 199048-199408 bp Feature: domain Description: TraG-D_C Location: 199048-199408 bp Feature: domain Description: Ftsk_gamma Location: 199816-199993 bp Feature: domain Description: Ftsk_gamma Location: 199816-199993 bp Feature: domain Description: Ftsk_gamma Location: 200125-200260 bp Feature: domain Description: Ftsk_gamma Location: 200125-200260 bp Feature: gene Location: 200949-201419 bp Feature: gene Location: 255599-256570 bp Feature: domain Description: TraC-F-type Location: 256019-256493 bp Feature: domain Description: TraC-F-type Location: 256019-256493 bp Feature: gene Location: 256717-256893 bp Feature: gene Location: 257286-259118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257586-258291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257586-258291 bp Feature: domain Description: HNHc Note: nucleases Location: 258870-259002 bp Feature: domain Description: HNHc Note: nucleases Location: 258870-259002 bp Feature: gene Location: 259409-260377 bp Feature: domain Description: TraC-F-type Location: 259436-260216 bp Feature: domain Description: TraC-F-type Location: 25943 6-260216 bp Feature: gene Location: 260408-264388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTS (pfam05175), RVT-GII, HNHc (smart00507), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), rpsA (TIGR00717), nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696)
Ftsk_gamma (smart00843), TraC-F-type (TIGR02746)

Seq: MU034382.1 Bacillus paranthracis strain A2 genomic scaffold scaffold51, whole genome shotgun sequence (6596 bp)
Overview 1 RT 1: 742-4571 bp Neighborhood of RT #1 [742, 5077] Ftsk_gamma Ftsk_gamma RVT-GII GIIM GIIM Ftsk_gamma SGTA_dimer Feature: gene Location: 742-1617 bp Feature: domain Description: Ftsk_gamma Location: 1174-1351 bp Feature: domain Description: Ftsk_gamma Location: 1174 -1351 bp Feature: domain Description: Ftsk_gamma Location: 1483-1615 bp Feature: domain Description: Ftsk_gamma Location: 14 83-1615 bp Feature: gene Location: 1682-2257 bp Feature: gene Location: 2541-3299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2547-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 7-2685 bp Feature: domain Description: GIIM Note: maturase Location: 2754-2985 bp Feature: domain Description: GIIM Note: maturase Location: 2754 -2985 bp Feature: gene Location: 3542-4090 bp Feature: domain Description: GIIM Note: maturase Location: 3548-3650 bp Feature: domain Description: GIIM Note: maturase Location: 354 8-3650 bp Feature: gene Location: 4301-5077 bp Feature: domain Description: Ftsk_gamma Location: 4310-4406 bp Feature: domain Description: Ftsk_gamma Location: 4 310-4 4 06 bp Feature: domain Description: SGTA_dimer Location: 4448-4571 bp Feature: domain Description: SGTA_dimer Location: 4 4 4 8-4 571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Ftsk_gamma (smart00843), SGTA_dimer (pfam16546)

Seq: MU034386.1 Bacillus paranthracis strain A2 genomic scaffold scaffold55, whole genome shotgun sequence (6514 bp)
Overview 1 RT 1: 97-6441 bp Neighborhood of RT #1 [97, 6441] B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII RVT-GII RVT-GII B_ant_repeat B_ant_repeat Feature: gene Location: 97-1005 bp Feature: domain Description: B_ant_repeat Location: 175-286 bp Feature: domain Description: B_ant_repeat Location: 175 -286 bp Feature: domain Description: B_ant_repeat Location: 526-682 bp Feature: domain Description: B_ant_repeat Location: 5 26-682 bp Feature: domain Description: B_ant_repeat Location: 925-1000 bp Feature: domain Description: B_ant_repeat Location: 925 -1000 bp Feature: gene Location: 1707-2537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028-2502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028-25 02 bp Feature: gene Location: 2515-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2557-2764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 5 7-2764 bp Feature: gene Location: 3156-3338 bp Feature: gene Location: 3360-3647 bp Feature: gene Location: 3656-4810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3977-4712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3977-4712 bp Feature: gene Location: 5543-6208 bp Feature: domain Description: B_ant_repeat Location: 5594-5705 bp Feature: domain Description: B_ant_repeat Location: 5 5 94-5 705 bp Feature: domain Description: B_ant_repeat Location: 5945-6101 bp Feature: domain Description: B_ant_repeat Location: 5 945 -6101 bp Feature: gene Location: 6250-6441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, B_ant_repeat (TIGR01451)