myRT

myRT report for GCA_012269835.1_ASM1226983v1

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Seq: JAAXJN010000592.1 Croceicoccus sp. isolate SW42617_bin_11 NODE_1027_length_10434_cov_26.418248, whole genome shotgun sequence (10434 bp)
Overview 1 RT 1: 3694-10022 bp Neighborhood of RT #1 [3694, 10294] RecQ UvrD UvrD UvrD RVT-Retrons Feature: gene Location: 3694-3948 bp Feature: gene Location: 4170-9302 bp Feature: domain Description: RecQ Location: 5013-6117 bp Feature: domain Description: RecQ Location: 501 3-61 1 7 bp Feature: domain Description: UvrD Location: 7458-7725 bp Feature: domain Description: UvrD Location: 7458-7725 bp Feature: domain Description: UvrD Location: 7860-8175 bp Feature: domain Description: UvrD Location: 7860-81 75 bp Feature: domain Description: UvrD Location: 8670-8862 bp Feature: domain Description: UvrD Location: 8670-8862 bp Feature: gene Location: 9344-10294 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9467-10022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9467-1 0022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecQ (COG0514), UvrD (COG0210), RVT-Retrons

Seq: JAAXJN010000132.1 Croceicoccus sp. isolate SW42617_bin_11 NODE_2574_length_5974_cov_36.019260, whole genome shotgun sequence (5974 bp)
Overview 1 RT 1: 4127-5275 bp Neighborhood of RT #1 [4127, 5628] HTH_XRE RVT-Retrons Feature: gene Location: 4127-4255 bp Feature: gene Location: 4281-4595 bp Feature: domain Description: HTH_XRE Location: 4308-4473 bp Feature: domain Description: HTH_XRE Location: 4308-4473 bp Feature: gene Location: 4582-5628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4762-5275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4762 -52 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: JAAXJN010000506.1 Croceicoccus sp. isolate SW42617_bin_11 NODE_6850_length_3307_cov_20.130074, whole genome shotgun sequence (3307 bp)
Overview 1 RT 1: 2-2917 bp Neighborhood of RT #1 [2, 2985] RVT-GII GIIM TrbC_Ftype Feature: gene Location: 2-190 bp Feature: gene Location: 608-2230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 2-1688 bp Feature: domain Description: GIIM Note: maturase Location: 1763-1976 bp Feature: domain Description: GIIM Note: maturase Location: 1763 -1976 bp Feature: gene Location: 2242-2985 bp Feature: domain Description: TrbC_Ftype Location: 2584-2917 bp Feature: domain Description: TrbC_Ftype Location: 2584-2917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC_Ftype (TIGR02742), RVT-GII, GIIM (pfam08388)