myRT

myRT report for GCA_012270115.1_ASM1227011v1

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Seq: JAAXIZ010000337.1 Alteromonas sp. isolate SW22112_bin_3 NODE_11501_length_4568_cov_27.298471, whole genome shotgun sequence (4568 bp)
Overview 1 RT 1: 192-3769 bp Neighborhood of RT #1 [192, 3769] RVT_N RVT-GII GIIM WcaG Feature: gene Location: 192-1706 bp Feature: RT Description: RVT_N Location: 282-525 bp Feature: RT Description: RVT_N Location: 282-525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570-1 1 97 bp Feature: domain Description: GIIM Note: maturase Location: 1254-1482 bp Feature: domain Description: GIIM Note: maturase Location: 1 254-1 482 bp Feature: gene Location: 2354-3235 bp Feature: domain Description: WcaG Location: 2357-3188 bp Feature: domain Description: WcaG Location: 2357-31 88 bp Feature: gene Location: 3368-3769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), WcaG (COG0451)

Seq: JAAXIZ010000054.1 Alteromonas sp. isolate SW22112_bin_3 NODE_3478_length_10939_cov_10.503583, whole genome shotgun sequence (10939 bp)
Overview 1 RT 1: 2005-8206 bp Neighborhood of RT #1 [2005, 8206] HMA PRK14727 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 2005-3645 bp Feature: domain Description: HMA Location: 2017-2197 bp Feature: domain Description: HMA Location: 2 017-2 197 bp Feature: domain Description: PRK14727 Location: 2224-3640 bp Feature: domain Description: PRK1472 7 Location: 2 2 2 4-3640 bp Feature: gene Location: 3946-4074 bp Feature: gene Location: 4452-5597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4719-5292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4719-52 92 bp Feature: gene Location: 5602-6957 bp Feature: domain Description: AAA_15 Location: 5605-5836 bp Feature: domain Description: AAA_15 Location: 5605-5836 bp Feature: domain Description: AAA_15 Location: 5983-6346 bp Feature: domain Description: AAA_15 Location: 5983-6346 bp Feature: gene Location: 7244-8206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMA (pfam00403), PRK14727 (putative mercuric reductase; Provisional), RVT-Retrons, AAA_15 (pfam13175)

Seq: JAAXIZ010000310.1 Alteromonas sp. isolate SW22112_bin_3 NODE_39456_length_2008_cov_60.253968, whole genome shotgun sequence (2008 bp)
Overview 1 RT 1: 266-1555 bp Neighborhood of RT #1 [266, 1905] RVT-GII Feature: gene Location: 266-412 bp Feature: gene Location: 511-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII