myRT

myRT report for GCA_012271205.1_ASM1227120v1

Download annotations/find similar RTs

Seq: JAAXGT010000116.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1021251, whole genome shotgun sequence (26150 bp)
Overview 1 RT 1: 21643-26146 bp Neighborhood of RT #1 [21643, 26148] CarbopepD_reg_2 ligand_gated_channel ligand_gated_channel ligand_gated_channel RVT-GII Feature: gene Location: 21643-24468 bp Feature: domain Description: CarbopepD_reg_2 Location: 21739-21958 bp Feature: domain Description: CarbopepD_reg_2 Location: 21 739-21 958 bp Feature: domain Description: ligand_gated_channel Location: 22042-22891 bp Feature: domain Description: ligand_gated_channel Location: 22042-22891 bp Feature: domain Description: ligand_gated_channel Location: 22972-23245 bp Feature: domain Description: ligand_gated_channel Location: 22972-23245 bp Feature: domain Description: ligand_gated_channel Location: 23638-24445 bp Feature: domain Description: ligand_gated_channel Location: 23638-24445 bp Feature: gene Location: 24822-25292 bp Feature: gene Location: 25351-26148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25729-26146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25729-261 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CarbopepD_reg_2 (pfam13715), ligand_gated_channel (cd01347), RVT-GII

Seq: JAAXGT010000205.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1025034, whole genome shotgun sequence (23959 bp)
Overview 1 RT 1: 2-1821 bp Neighborhood of RT #1 [2, 1821] RVT-GII Feature: gene Location: 2-433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209-272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 09-2 72 bp Feature: gene Location: 613-1047 bp Feature: gene Location: 1150-1821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAXGT010000133.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1033162, whole genome shotgun sequence (18948 bp)
Overview 1 RT 1: 1061-4360 bp Neighborhood of RT #1 [1061, 4470] RVT-GII NHL_like_6 TlpA_like_family Feature: gene Location: 1061-1228 bp Feature: gene Location: 1338-1472 bp Feature: gene Location: 1862-2707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883 -2021 bp Feature: gene Location: 2716-3810 bp Feature: domain Description: NHL_like_6 Location: 2887-3160 bp Feature: domain Description: NHL_like_6 Location: 2887-3 160 bp Feature: gene Location: 3847-4470 bp Feature: domain Description: TlpA_like_family Location: 4066-4360 bp Feature: domain Description: TlpA_like_family Location: 4066-43 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NHL_like_6 (cd14962), TlpA_like_family (cd02966)

Seq: JAAXGT010000002.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1041417, whole genome shotgun sequence (6117 bp)
Overview 1 RT 1: 1-3044 bp Neighborhood of RT #1 [1, 3070] RVT-GII TrpE Feature: gene Location: 1-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-322 bp Feature: gene Location: 495-1190 bp Feature: gene Location: 1820-3070 bp Feature: domain Description: TrpE Location: 2057-3044 bp Feature: domain Description: TrpE Location: 2057-304 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TrpE (COG0147)

Seq: JAAXGT010000061.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1057557, whole genome shotgun sequence (7339 bp)
Overview 1 RT 1: 2-4911 bp Neighborhood of RT #1 [2, 4925] RVT-UG1 tpiA Feature: gene Location: 2-3745 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 701-1190 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 701-1190 bp Feature: gene Location: 3912-4157 bp Feature: gene Location: 4167-4925 bp Feature: domain Description: tpiA Location: 4173-4911 bp Feature: domain Description: tpiA Location: 4173-4911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, tpiA (PRK00042)

Seq: JAAXGT010000018.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1082647, whole genome shotgun sequence (6698 bp)
Overview 1 RT 1: 3351-6697 bp Neighborhood of RT #1 [3351, 6697] DUF5128 RVT-GII GIIM Feature: gene Location: 3351-3650 bp Feature: gene Location: 3793-4998 bp Feature: domain Description: DUF5128 Location: 4051-4234 bp Feature: domain Description: DUF5128 Location: 4051-4234 bp Feature: gene Location: 5531-5872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5576-5870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5576 -5870 bp Feature: gene Location: 5912-6250 bp Feature: domain Description: GIIM Note: maturase Location: 5972-6149 bp Feature: domain Description: GIIM Note: maturase Location: 5972-6 149 bp Feature: gene Location: 6407-6697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5128 (pfam17170), RVT-GII, GIIM (pfam08388)

Seq: JAAXGT010000113.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_1130945, whole genome shotgun sequence (10020 bp)
Overview 1 RT 1: 27-1160 bp Neighborhood of RT #1 [27, 1160] RVT-GII group_II_RT_mat Feature: gene Location: 27-464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-429 bp Feature: gene Location: 437-988 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 755-926 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7 55-926 bp Feature: gene Location: 1017-1160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JAAXGT010000128.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_796843, whole genome shotgun sequence (36088 bp)
Overview 1 RT 1: 33505-36044 bp Neighborhood of RT #1 [33505, 36085] DUF4249 DUF4249 RVT-GII Feature: gene Location: 33505-34476 bp Feature: domain Description: DUF4249 Location: 33529-33925 bp Feature: domain Description: DUF4249 Location: 33529-33925 bp Feature: domain Description: DUF4249 Location: 34213-34339 bp Feature: domain Description: DUF4249 Location: 34213-34339 bp Feature: gene Location: 34899-35228 bp Feature: gene Location: 35507-36085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35879-36044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358 79-36044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4249 (pfam14054), RVT-GII

Seq: JAAXGT010000213.1 Rhodothermales bacterium isolate Plut_88870 unfiltered_Plut_88870_genomic_contig_961322, whole genome shotgun sequence (71516 bp)
Overview 1 RT 1: 16876-20047 bp Neighborhood of RT #1 [16876, 20100] RVT-GII Transposase_20 DEDD_Tnp_IS110 Feature: gene Location: 16876-17202 bp Feature: gene Location: 17907-18248 bp Feature: gene Location: 18367-18750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18511-18715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18511-18715 bp Feature: gene Location: 18791-19363 bp Feature: domain Description: Transposase_20 Location: 18983-19229 bp Feature: domain Description: Transposase_20 Location: 189 83-19 229 bp Feature: gene Location: 19489-20100 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 19603-20047 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 19 603-20047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548)