myRT

myRT report for GCA_012273675.1_ASM1227367v1

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Seq: JAAXCO010000001.1 Pseudomonas fluorescens strain B98SK52 Scaffold1, whole genome shotgun sequence (618827 bp)
Overview 1 RT 1: 249338-252730 bp Neighborhood of RT #1 [249338, 252730] INT_RitA_C_like RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 249338-249754 bp Feature: domain Description: INT_RitA_C_like Location: 249536-249722 bp Feature: domain Description: INT_RitA_C_like Location: 249536-249722 bp Feature: gene Location: 250347-250541 bp Feature: gene Location: 250576-251865 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 250822-251407 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 250822-251 407 bp Feature: gene Location: 251970-252152 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 252000-252105 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 252000-2521 05 bp Feature: gene Location: 252269-252730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: JAAXCO010000004.1 Pseudomonas fluorescens strain B98SK52 Scaffold4, whole genome shotgun sequence (366324 bp)
Overview 1 RT 1: 195648-200890 bp Neighborhood of RT #1 [195648, 200919] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 195648-196610 bp Feature: domain Description: ACR3 Location: 195663-196590 bp Feature: domain Description: ACR3 Location: 195663-196590 bp Feature: gene Location: 196649-196783 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 196655-196766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 196655-196766 bp Feature: gene Location: 196975-198636 bp Feature: domain Description: RVT_N Location: 197020-197263 bp Feature: domain Description: RVT_N Location: 19702 0-1972 63 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197308-197944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197308-197944 bp Feature: domain Description: GIIM Note: maturase Location: 198001-198229 bp Feature: domain Description: GIIM Note: maturase Location: 198001-1982 2 9 bp Feature: gene Location: 199194-200522 bp Feature: domain Description: LZ_Tnp_IS66 Location: 199326-199533 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19932 6-199533 bp Feature: domain Description: zf-IS66 Location: 199572-199686 bp Feature: domain Description: zf-IS66 Location: 199572 -199686 bp Feature: domain Description: DDE_Tnp_IS66 Location: 199728-200502 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19972 8-2 00502 bp Feature: gene Location: 200584-200919 bp Feature: domain Description: TnpB_IS66 Location: 200602-200890 bp Feature: domain Description: TnpB_IS66 Location: 2 00602 -2 00890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)