myRT

myRT report for GCA_012274245.1_ASM1227424v1

Download annotations/find similar RTs

Seq: JAANYX010000005.1 Mameliella sp. LZ-28 NODE_14, whole genome shotgun sequence (128125 bp)
Overview 1 RT 1: 1593-5898 bp Neighborhood of RT #1 [1593, 5960] TnpB_IS66 HTH_Tnp_1 RVT-Retrons PRiA4_ORF3 Feature: gene Location: 1593-1946 bp Feature: domain Description: TnpB_IS66 Location: 1620-1911 bp Feature: domain Description: TnpB_IS66 Location: 1 620-1 91 1 bp Feature: gene Location: 1943-2350 bp Feature: domain Description: HTH_Tnp_1 Location: 1994-2159 bp Feature: domain Description: HTH_Tnp_1 Location: 1 994-21 59 bp Feature: gene Location: 2642-3820 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2906-3542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2906-3542 bp Feature: gene Location: 4020-5279 bp Feature: gene Location: 5358-5960 bp Feature: domain Description: PRiA4_ORF3 Location: 5385-5898 bp Feature: domain Description: PRiA4_ORF3 Location: 5385-5898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-Retrons, PRiA4_ORF3 (pfam07929)

Seq: JAANYX010000010.1 Mameliella sp. LZ-28 NODE_19, whole genome shotgun sequence (96282 bp)
Overview 1 RT 1: 38307-42378 bp Neighborhood of RT #1 [38307, 42386] SSB_OBF RVT-UG2 PRK00024 Feature: gene Location: 38307-38711 bp Feature: domain Description: SSB_OBF Location: 38322-38643 bp Feature: domain Description: SSB_OBF Location: 3832 2 -38643 bp Feature: gene Location: 38758-38967 bp Feature: gene Location: 39154-40449 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 39340-40123 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 39340-4012 3 bp Feature: gene Location: 40622-41821 bp Feature: gene Location: 41946-42386 bp Feature: domain Description: PRK00024 Location: 41991-42378 bp Feature: domain Description: PRK0002 4 Location: 41991-42 378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT-UG2, PRK00024 (DNA repair protein RadC)