myRT

myRT report for GCA_012275345.1_ASM1227534v1

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Seq: JAAZQI010000008.1 Rhizobium sp. SG570 Ga0365345_08, whole genome shotgun sequence (328166 bp)
Overview 1 RT 1: 71411-78795 bp Neighborhood of RT #1 [71411, 78908] mcbC-like_oxidoreductase PRK01229 RVT-Retrons Trypsin_2 CadC1 COG3903 metallo-hydrolase-like_MBL-fold Feature: gene Location: 71411-72079 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 71537-72029 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 71 537-72029 bp Feature: gene Location: 72086-72859 bp Feature: domain Description: PRK01229 Location: 72269-72782 bp Feature: domain Description: PRK01 229 Location: 72269-72782 bp Feature: gene Location: 73098-74696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73260-73857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73260-73857 bp Feature: domain Description: Trypsin_2 Location: 74205-74616 bp Feature: domain Description: Trypsin_2 Location: 74205-7461 6 bp Feature: gene Location: 74976-77852 bp Feature: domain Description: CadC1 Location: 75126-75462 bp Feature: domain Description: CadC1 Location: 751 26-75462 bp Feature: domain Description: COG3903 Location: 75522-76743 bp Feature: domain Description: COG3903 Location: 75522-76743 bp Feature: gene Location: 77877-78908 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 77997-78795 bp Feature: domain Description: metallo-hydrolase-like_MBL-fold Location: 77997-78795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mcbC-like_oxidoreductase, PRK01229 (N-glycosylase/DNA lyase; Provisional), RVT-Retrons, Trypsin_2 (pfam13365), CadC1 (COG3710), COG3903 (Predicted ATPase ), metallo-hydrolase-like_MBL-fold (cl23716)

Seq: JAAZQI010000021.1 Rhizobium sp. SG570 Ga0365345_21, whole genome shotgun sequence (99151 bp)
Overview 1 RT 1: 18284-22560 bp Neighborhood of RT #1 [18284, 22560] NHEJ_ligase_lig 57B RVT-GII Feature: gene Location: 18284-19327 bp Feature: domain Description: NHEJ_ligase_lig Location: 18428-19310 bp Feature: domain Description: NHEJ_ligase_lig Location: 1842 8-19310 bp Feature: gene Location: 19525-19950 bp Feature: domain Description: 57B Location: 19729-19849 bp Feature: domain Description: 57B Location: 1972 9-19849 bp Feature: gene Location: 20484-21962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20895-21582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0895-2 1582 bp Feature: gene Location: 21987-22331 bp Feature: gene Location: 22360-22560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHEJ_ligase_lig (TIGR02779), 57B (PHA02574), RVT-GII

Seq: JAAZQI010000035.1 Rhizobium sp. SG570 Ga0365345_35, whole genome shotgun sequence (37353 bp)
Overview 1 RT 1: 265-7645 bp 2 RT 2: 15850-18280 bp Neighborhood of RT #1 [265, 7815] DDE_3 RVT-GII GIIM integrase_gron RVT-GII KOG0430 KOG0430 KOG0430 TadA Neighborhood of RT #2 [15850, 18354] Rve RVT-GII GIIM Rve Rve Feature: gene Location: 265-780 bp Feature: domain Description: DDE_3 Location: 295-694 bp Feature: domain Description: DDE_3 Location: 295-694 bp Feature: gene Location: 834-1556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1167 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1470 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1470 bp Feature: gene Location: 1540-2457 bp Feature: domain Description: integrase_gron Location: 1573-2050 bp Feature: domain Description: integrase_gron Location: 1573 -2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119-243 7 bp Feature: gene Location: 2595-7106 bp Feature: domain Description: KOG0430 Location: 2616-2877 bp Feature: domain Description: KOG043 0 Location: 2616-2877 bp Feature: domain Description: KOG0430 Location: 3018-4962 bp Feature: domain Description: KOG043 0 Location: 3 018-4962 bp Feature: domain Description: KOG0430 Location: 5127-7083 bp Feature: domain Description: KOG043 0 Location: 5127-7083 bp Feature: gene Location: 7210-7815 bp Feature: domain Description: TadA Location: 7255-7645 bp Feature: domain Description: TadA Location: 7255-7645 bp Feature: gene Location: 15850-16089 bp Feature: domain Description: Rve Location: 15862-16036 bp Feature: domain Description: Rve Location: 15862-1603 6 bp Feature: gene Location: 16240-16581 bp Feature: gene Location: 16574-17833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16778-17435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16778-1743 5 bp Feature: domain Description: GIIM Note: maturase Location: 17516-17744 bp Feature: domain Description: GIIM Note: maturase Location: 17516-17744 bp Feature: gene Location: 17872-18009 bp Feature: domain Description: Rve Location: 17899-18007 bp Feature: domain Description: Rve Location: 17899-18007 bp Feature: gene Location: 18010-18354 bp Feature: domain Description: Rve Location: 18016-18280 bp Feature: domain Description: Rve Location: 18016-18280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), RVT-GII, KOG0430 (KOG0430, Xanthine dehydrogenase ), DDE_3 (pfam13358), GIIM (pfam08388), Rve (COG3316)

Seq: JAAZQI010000053.1 Rhizobium sp. SG570 Ga0365345_53, whole genome shotgun sequence (2228 bp)
Overview 1 RT 1: 625-2008 bp Neighborhood of RT #1 [625, 2145] RVT_N RVT-GII GIIM Feature: gene Location: 625-2145 bp Feature: RT Description: RVT_N Location: 634-847 bp Feature: RT Description: RVT_N Location: 634 -84 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1693 bp Feature: domain Description: GIIM Note: maturase Location: 1765-2008 bp Feature: domain Description: GIIM Note: maturase Location: 1765-2008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)