myRT

myRT report for GCA_012275775.1_ASM1227577v1

Download annotations/find similar RTs

Seq: JAAXMN010000001.1 Staphylococcus pseudintermedius strain M1S SCAFFOLD01, whole genome shotgun sequence (488384 bp)
Overview 1 RT 1: 421129-425263 bp Neighborhood of RT #1 [421129, 425263] group_II_RT_mat RVT-GII Feature: gene Location: 421129-421296 bp Feature: gene Location: 422217-422828 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 422223-422568 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 422223-422568 bp Feature: gene Location: 422981-423565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423206-423539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423206-423539 bp Feature: gene Location: 424108-424743 bp Feature: gene Location: 424766-425263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JAAXMN010000003.1 Staphylococcus pseudintermedius strain M1S SCAFFOLD03, whole genome shotgun sequence (213252 bp)
Overview 1 RT 1: 127643-132084 bp Neighborhood of RT #1 [127643, 132098] PRK06526 eMpr RVT-GII CcmA Feature: gene Location: 127643-127975 bp Feature: domain Description: PRK06526 Location: 127658-127940 bp Feature: domain Description: PRK0652 6 Location: 12 7658-12 7940 bp Feature: gene Location: 128315-129145 bp Feature: domain Description: eMpr Location: 128486-129011 bp Feature: domain Description: eMpr Location: 12 8486-12 9011 bp Feature: gene Location: 129275-130156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129500-130115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9500-130115 bp Feature: gene Location: 130726-131448 bp Feature: gene Location: 131463-132098 bp Feature: domain Description: CcmA Location: 131478-132084 bp Feature: domain Description: CcmA Location: 131478-132 084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), eMpr (COG3591), RVT-GII, CcmA (COG4133)

Seq: JAAXMN010000004.1 Staphylococcus pseudintermedius strain M1S SCAFFOLD04, whole genome shotgun sequence (199230 bp)
Overview 1 RT 1: 29617-36992 bp Neighborhood of RT #1 [29617, 36992] met_A_Alw26 Eco57I TaqI_C RVT-UG2 YeiB Feature: gene Location: 29617-32925 bp Feature: domain Description: met_A_Alw26 Location: 30895-31012 bp Feature: domain Description: met_A_Alw26 Location: 3 0895-3 1012 bp Feature: domain Description: Eco57I Location: 31744-32065 bp Feature: domain Description: Eco57I Location: 3 1744-3 2065 bp Feature: domain Description: TaqI_C Location: 32383-32737 bp Feature: domain Description: TaqI_C Location: 3 23 83 -3 273 7 bp Feature: gene Location: 33298-33564 bp Feature: gene Location: 33524-34840 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 33704-34520 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 3 704-3 4520 bp Feature: gene Location: 35425-36642 bp Feature: domain Description: YeiB Location: 35461-36628 bp Feature: domain Description: YeiB Location: 3 5461-3 6628 bp Feature: gene Location: 36807-36992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), Eco57I (pfam07669), TaqI_C (pfam12950), RVT-UG2, YeiB (COG2311)

Seq: JAAXMN010000030.1 Staphylococcus pseudintermedius strain M1S SCAFFOLD30, whole genome shotgun sequence (10528 bp)
Overview 1 RT 1: 5708-10491 bp Neighborhood of RT #1 [5708, 10491] PFL1 RVT-GII GIIM Feature: gene Location: 5708-7957 bp Feature: domain Description: PFL1 Location: 5741-7946 bp Feature: domain Description: PFL1 Location: 574 1-794 6 bp Feature: gene Location: 8051-8179 bp Feature: gene Location: 8290-9585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8515-9127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8515-9127 bp Feature: domain Description: GIIM Note: maturase Location: 9190-9421 bp Feature: domain Description: GIIM Note: maturase Location: 9190-94 21 bp Feature: gene Location: 9954-10184 bp Feature: gene Location: 10306-10491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFL1 (cd01678), RVT-GII, GIIM (pfam08388)