myRT

myRT report for GCA_012328925.1_ASM1232892v1

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Seq: JAAXLS010000105.1 Amycolatopsis sp. K13G38 NODE_105_length_2618_cov_104.171819, whole genome shotgun sequence (2618 bp)
Overview 1 RT 1: 879-2615 bp Neighborhood of RT #1 [879, 2615] RVT-GII GIIM Feature: gene Location: 879-2309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200-1887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 200-1 887 bp Feature: domain Description: GIIM Note: maturase Location: 1956-2187 bp Feature: domain Description: GIIM Note: maturase Location: 1 956-21 87 bp Feature: gene Location: 2454-2615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAXLS010000016.1 Amycolatopsis sp. K13G38 NODE_16_length_138577_cov_51.931802, whole genome shotgun sequence (138577 bp)
Overview 1 RT 1: 25439-28433 bp Neighborhood of RT #1 [25439, 28433] PRK02101 YfmG RVT-CRISPR-like QueC Feature: gene Location: 25439-25894 bp Feature: domain Description: PRK02101 Location: 25505-25661 bp Feature: domain Description: PRK02 101 Location: 2 5505-2 5661 bp Feature: gene Location: 25891-26439 bp Feature: domain Description: YfmG Location: 26014-26434 bp Feature: domain Description: YfmG Location: 2 6014-2 6434 bp Feature: gene Location: 26444-26779 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26528-26744 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 652 8-2 6744 bp Feature: gene Location: 27425-28192 bp Feature: domain Description: QueC Location: 27518-28178 bp Feature: domain Description: QueC Location: 2 7518-2 8178 bp Feature: gene Location: 28272-28433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02101 (peroxide stress protein YaaA), YfmG (COG1262), RVT-CRISPR, QueC (pfam06508)

Seq: JAAXLS010000065.1 Amycolatopsis sp. K13G38 NODE_65_length_34088_cov_42.957952, whole genome shotgun sequence (34088 bp)
Overview 1 RT 1: 5397-11403 bp Neighborhood of RT #1 [5397, 11411] PinE Zn_ribbon_recom excise RVT-GII GIIM PHA02517 PRK07825 Feature: gene Location: 5397-5747 bp Feature: gene Location: 5854-7905 bp Feature: domain Description: PinE Location: 5902-6505 bp Feature: domain Description: PinE Location: 5902-6505 bp Feature: domain Description: Zn_ribbon_recom Location: 6841-7006 bp Feature: domain Description: Zn_ribbon_recom Location: 6841-7006 bp Feature: domain Description: excise Location: 7693-7807 bp Feature: domain Description: excise Location: 7693 -7807 bp Feature: gene Location: 7635-9278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8046-8703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8046-8703 bp Feature: domain Description: GIIM Note: maturase Location: 8778-9006 bp Feature: domain Description: GIIM Note: maturase Location: 8778-9006 bp Feature: gene Location: 9275-10369 bp Feature: domain Description: PHA02517 Location: 9359-10169 bp Feature: domain Description: PHA02517 Location: 93 59-10169 bp Feature: gene Location: 10578-11411 bp Feature: domain Description: PRK07825 Location: 10605-11403 bp Feature: domain Description: PRK07825 Location: 10605-11403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK07825 (short chain dehydrogenase; Provisional)