myRT

myRT report for GCA_012328945.1_ASM1232894v1

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Seq: JAAXNV010000104.1 Escherichia coli strain 92 NODE_104_length_1009_cov_1559.965409, whole genome shotgun sequence (1009 bp)
Overview 1 RT 1: 3-1006 bp Neighborhood of RT #1 [3, 1006] RVT-GII Feature: gene Location: 3-353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-348 bp Feature: gene Location: 647-1006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAXNV010000020.1 Escherichia coli strain 92 NODE_20_length_76789_cov_276.091302, whole genome shotgun sequence (76789 bp)
Overview 1 RT 1: 853-4323 bp Neighborhood of RT #1 [853, 4430] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 853-1155 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862 -1114 bp Feature: gene Location: 1339-1584 bp Feature: gene Location: 1610-2542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712 -2 306 bp Feature: gene Location: 2544-3530 bp Feature: gene Location: 4158-4430 bp Feature: domain Description: PRK09678 Location: 4167-4323 bp Feature: domain Description: PRK09678 Location: 4167-432 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JAAXNV010000025.1 Escherichia coli strain 92 NODE_25_length_57263_cov_267.182090, whole genome shotgun sequence (57263 bp)
Overview 1 RT 1: 2965-12041 bp Neighborhood of RT #1 [2965, 12043] Ail_Lom phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2965-3564 bp Feature: domain Description: Ail_Lom Location: 2968-3562 bp Feature: domain Description: Ail_Lom Location: 2968-3 562 bp Feature: gene Location: 3629-7387 bp Feature: domain Description: phage_tail_N Location: 3632-4031 bp Feature: domain Description: phage_tail_N Location: 3 63 2-403 1 bp Feature: domain Description: Peptidase_S74 Location: 6956-7103 bp Feature: domain Description: Peptidase_S74 Location: 6956-7103 bp Feature: domain Description: APC_N_CC Location: 7256-7379 bp Feature: domain Description: APC_N_CC Location: 7256-73 79 bp Feature: gene Location: 8015-9619 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8306-8897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83 06-8897 bp Feature: domain Description: TIR_2 Location: 9224-9557 bp Feature: domain Description: TIR_2 Location: 9224-9557 bp Feature: gene Location: 9977-10237 bp Feature: domain Description: PRK10597 Location: 9980-10220 bp Feature: domain Description: PRK10597 Location: 9980-10220 bp Feature: gene Location: 10457-12043 bp Feature: domain Description: prfC Location: 10475-12041 bp Feature: domain Description: prfC Location: 10475-12041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JAAXNV010000280.1 Escherichia coli strain 92 NODE_286_length_482_cov_1.341920, whole genome shotgun sequence (482 bp)
Overview 1 RT 1: 3-294 bp Neighborhood of RT #1 [3, 479] RVT-GII Feature: gene Location: 3-479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAXNV010000040.1 Escherichia coli strain 92 NODE_40_length_37626_cov_177.698464, whole genome shotgun sequence (37626 bp)
Overview 1 RT 1: 15242-19457 bp Neighborhood of RT #1 [15242, 20239] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 15242-15457 bp Feature: gene Location: 15548-15829 bp Feature: domain Description: HTH_XRE Location: 15563-15728 bp Feature: domain Description: HTH_XRE Location: 15 5 63-15 728 bp Feature: gene Location: 15822-16922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15963-16515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 963-165 15 bp Feature: gene Location: 17006-18502 bp Feature: domain Description: PRK13889 Location: 17009-17588 bp Feature: domain Description: PRK13889 Location: 17009-175 88 bp Feature: gene Location: 19238-20239 bp Feature: domain Description: CoiA Location: 19319-19457 bp Feature: domain Description: CoiA Location: 19319-1945 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)

Seq: JAAXNV010000045.1 Escherichia coli strain 92 NODE_45_length_27568_cov_271.079780, whole genome shotgun sequence (27568 bp)
Overview 1 RT 1: 19418-24890 bp Neighborhood of RT #1 [19418, 24890] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19418-19852 bp Feature: domain Description: psiB Location: 19421-19847 bp Feature: domain Description: psiB Location: 19421-19847 bp Feature: gene Location: 19905-21185 bp Feature: gene Location: 21377-23278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21644-22475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216 44-22475 bp Feature: domain Description: Intron_maturas2 Location: 22589-22847 bp Feature: domain Description: Intron_maturas2 Location: 22589-22847 bp Feature: domain Description: HNHc Note: nucleases Location: 23021-23183 bp Feature: domain Description: HNHc Note: nucleases Location: 23021-23183 bp Feature: gene Location: 23841-24383 bp Feature: gene Location: 24699-24890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAXNV010000008.1 Escherichia coli strain 92 NODE_8_length_179243_cov_271.515001, whole genome shotgun sequence (179243 bp)
Overview 1 RT 1: 23621-27912 bp Neighborhood of RT #1 [23621, 27912] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23621-24883 bp Feature: domain Description: YesM Location: 24134-24875 bp Feature: domain Description: YesM Location: 24134-2487 5 bp Feature: gene Location: 24913-25083 bp Feature: gene Location: 25433-25954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25439-25721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25439-257 21 bp Feature: domain Description: GIIM Note: maturase Location: 25769-25949 bp Feature: domain Description: GIIM Note: maturase Location: 257 69-25949 bp Feature: gene Location: 25982-26521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26312-26390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26312-26390 bp Feature: gene Location: 26552-26749 bp Feature: gene Location: 27007-27912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAXNV010000099.1 Escherichia coli strain 92 NODE_99_length_1222_cov_1603.165381, whole genome shotgun sequence (1222 bp)
Overview 1 RT 1: 3-885 bp Neighborhood of RT #1 [3, 1130] RVT-GII GIIM Feature: gene Location: 3-1130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-612 bp Feature: domain Description: GIIM Note: maturase Location: 687-885 bp Feature: domain Description: GIIM Note: maturase Location: 68 7-8 8 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)