myRT

myRT report for GCA_012328955.1_ASM1232895v1

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Seq: JAAXNW010000022.1 Escherichia coli strain 311 NODE_22_length_71533_cov_49.064048, whole genome shotgun sequence (71533 bp)
Overview 1 RT 1: 24050-28745 bp Neighborhood of RT #1 [24050, 28745] PRK10276 RVT-GII Intron_maturas2 HNHc PRK13704 Feature: gene Location: 24050-24469 bp Feature: domain Description: PRK10276 Location: 24089-24455 bp Feature: domain Description: PRK1 0276 Location: 24089-24455 bp Feature: gene Location: 24483-24692 bp Feature: gene Location: 24827-26728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25094-25925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25094-25925 bp Feature: domain Description: Intron_maturas2 Location: 26039-26297 bp Feature: domain Description: Intron_maturas2 Location: 26039-26297 bp Feature: domain Description: HNHc Note: nucleases Location: 26471-26633 bp Feature: domain Description: HNHc Note: nucleases Location: 26471 -26633 bp Feature: gene Location: 26956-28152 bp Feature: domain Description: PRK13704 Location: 27799-28144 bp Feature: domain Description: PRK1 3704 Location: 27799-281 44 bp Feature: gene Location: 28149-28745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)

Seq: JAAXNW010000031.1 Escherichia coli strain 311 NODE_31_length_49350_cov_48.158474, whole genome shotgun sequence (49350 bp)
Overview 1 RT 1: 22906-27197 bp Neighborhood of RT #1 [22906, 27197] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 22906-24168 bp Feature: domain Description: YesM Location: 23419-24160 bp Feature: domain Description: YesM Location: 2 3419-2 4160 bp Feature: gene Location: 24198-24368 bp Feature: gene Location: 24718-25239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24724-25006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 472 4-2 5006 bp Feature: domain Description: GIIM Note: maturase Location: 25054-25234 bp Feature: domain Description: GIIM Note: maturase Location: 2 5054-2 52 34 bp Feature: gene Location: 25267-25806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25597-25675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5597-2 5675 bp Feature: gene Location: 25837-26034 bp Feature: gene Location: 26292-27197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAXNW010000051.1 Escherichia coli strain 311 NODE_51_length_27620_cov_47.542137, whole genome shotgun sequence (27620 bp)
Overview 1 RT 1: 853-4323 bp Neighborhood of RT #1 [853, 4430] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 853-1155 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: gene Location: 1339-1584 bp Feature: gene Location: 1610-2542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-23 06 bp Feature: gene Location: 2544-3530 bp Feature: gene Location: 4158-4430 bp Feature: domain Description: PRK09678 Location: 4167-4323 bp Feature: domain Description: PRK09678 Location: 4167-43 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JAAXNW010000088.1 Escherichia coli strain 311 NODE_88_length_2272_cov_271.486243, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)