myRT

myRT report for GCA_012329005.1_ASM1232900v1

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Seq: JAAXNT010000015.1 Escherichia coli strain 91 NODE_15_length_95048_cov_265.696525, whole genome shotgun sequence (95048 bp)
Overview 1 RT 1: 45224-53630 bp Neighborhood of RT #1 [45224, 53638] prfC PRK10597 RVT-Retrons TIR_2 phage_tail_N Peptidase_S74 APC_N_CC Feature: gene Location: 45224-46810 bp Feature: domain Description: prfC Location: 45242-46808 bp Feature: domain Description: prfC Location: 45242-46808 bp Feature: gene Location: 47030-47290 bp Feature: domain Description: PRK10597 Location: 47033-47273 bp Feature: domain Description: PRK1 0597 Location: 47033-47273 bp Feature: gene Location: 47648-49252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47939-48530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47939-48530 bp Feature: domain Description: TIR_2 Location: 48857-49190 bp Feature: domain Description: TIR_2 Location: 48857-491 90 bp Feature: gene Location: 49582-49755 bp Feature: gene Location: 49880-53638 bp Feature: domain Description: phage_tail_N Location: 49883-50282 bp Feature: domain Description: phage_tail_N Location: 49883-50282 bp Feature: domain Description: Peptidase_S74 Location: 53207-53354 bp Feature: domain Description: Peptidase_S74 Location: 53207-53354 bp Feature: domain Description: APC_N_CC Location: 53507-53630 bp Feature: domain Description: APC_N_CC Location: 53507-53630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: JAAXNT010000022.1 Escherichia coli strain 91 NODE_22_length_76789_cov_270.153543, whole genome shotgun sequence (76789 bp)
Overview 1 RT 1: 72810-75896 bp Neighborhood of RT #1 [72810, 75937] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 72810-72959 bp Feature: gene Location: 73260-74246 bp Feature: gene Location: 74248-75180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74350-74944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74350-74944 bp Feature: gene Location: 75206-75451 bp Feature: gene Location: 75635-75937 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75644-75896 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75644-75896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: JAAXNT010000040.1 Escherichia coli strain 91 NODE_40_length_37626_cov_173.727316, whole genome shotgun sequence (37626 bp)
Overview 1 RT 1: 15242-19457 bp Neighborhood of RT #1 [15242, 20239] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 15242-15457 bp Feature: gene Location: 15548-15829 bp Feature: domain Description: HTH_XRE Location: 15563-15728 bp Feature: domain Description: HTH_XRE Location: 15563 -15728 bp Feature: gene Location: 15822-16922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15963-16515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15963 -16515 bp Feature: gene Location: 17006-18502 bp Feature: domain Description: PRK13889 Location: 17009-17588 bp Feature: domain Description: PRK13 889 Location: 17009-17588 bp Feature: gene Location: 19238-20239 bp Feature: domain Description: CoiA Location: 19319-19457 bp Feature: domain Description: CoiA Location: 193 19-19457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)

Seq: JAAXNT010000044.1 Escherichia coli strain 91 NODE_44_length_30927_cov_239.839337, whole genome shotgun sequence (30927 bp)
Overview 1 RT 1: 19418-24890 bp Neighborhood of RT #1 [19418, 24890] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 19418-19852 bp Feature: domain Description: psiB Location: 19421-19847 bp Feature: domain Description: psiB Location: 194 21-1984 7 bp Feature: gene Location: 19905-21185 bp Feature: gene Location: 21377-23278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21644-22475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164 4 -224 75 bp Feature: domain Description: Intron_maturas2 Location: 22589-22847 bp Feature: domain Description: Intron_maturas2 Location: 22589-2284 7 bp Feature: domain Description: HNHc Note: nucleases Location: 23021-23183 bp Feature: domain Description: HNHc Note: nucleases Location: 23021-23183 bp Feature: gene Location: 23841-24383 bp Feature: gene Location: 24699-24890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAXNT010000008.1 Escherichia coli strain 91 NODE_8_length_179810_cov_264.846530, whole genome shotgun sequence (179810 bp)
Overview 1 RT 1: 24188-28479 bp Neighborhood of RT #1 [24188, 28479] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24188-25450 bp Feature: domain Description: YesM Location: 24701-25442 bp Feature: domain Description: YesM Location: 24701-25 442 bp Feature: gene Location: 25480-25650 bp Feature: gene Location: 26000-26521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26006-26288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26006-26288 bp Feature: domain Description: GIIM Note: maturase Location: 26336-26516 bp Feature: domain Description: GIIM Note: maturase Location: 26336-265 16 bp Feature: gene Location: 26549-27088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26879-26957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26879-2695 7 bp Feature: gene Location: 27119-27316 bp Feature: gene Location: 27574-28479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JAAXNT010000092.1 Escherichia coli strain 91 NODE_92_length_1222_cov_1571.365895, whole genome shotgun sequence (1222 bp)
Overview 1 RT 1: 93-975 bp Neighborhood of RT #1 [93, 1220] RVT-GII GIIM Feature: gene Location: 93-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96 -702 bp Feature: domain Description: GIIM Note: maturase Location: 777-975 bp Feature: domain Description: GIIM Note: maturase Location: 777-975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAXNT010000095.1 Escherichia coli strain 91 NODE_95_length_1009_cov_1518.983229, whole genome shotgun sequence (1009 bp)
Overview 1 RT 1: 3-1006 bp Neighborhood of RT #1 [3, 1006] RVT-GII Feature: gene Location: 3-353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 6-348 bp Feature: gene Location: 647-1006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII