myRT

myRT report for GCA_012393465.1_ASM1239346v1

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Seq: JAAXYY010000002.1 Klebsiella variicola strain FDAARGOS_625 tig00000001_pilon, whole genome shotgun sequence (5729753 bp)
Overview 1 RT 1: 534774-538835 bp 2 RT 2: 657801-661499 bp 3 RT 3: 1590251-1597156 bp 4 RT 4: 2385285-2392005 bp 5 RT 5: 4549695-4553418 bp 6 RT 6: 4772567-4780563 bp Neighborhood of RT #1 [534774, 538835] PRK10597 RVT-GII PHA02517 Neighborhood of RT #2 [657801, 661594] PRK10597 RVT-GII putAbiC Neighborhood of RT #3 [1590251, 1597206] FhaC PRK10276 RVT-GII TesA SGNH_hydrolase Neighborhood of RT #4 [2385285, 2392005] Psu RVT-GII PRK09692 Neighborhood of RT #5 [4549695, 4553624] HTH_XRE Peptidase_M78 RVT-GII PRK10276 Neighborhood of RT #6 [4772567, 4780568] DinI RVT-GII RVT-GII RVT-GII PRK10276 umuC Feature: gene Location: 534774-535022 bp Feature: domain Description: PRK10597 Location: 534777-535017 bp Feature: domain Description: PRK1 0597 Location: 534777-53501 7 bp Feature: gene Location: 535245-535529 bp Feature: gene Location: 535607-537091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536009-536699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536009-536699 bp Feature: gene Location: 537802-538668 bp Feature: domain Description: PHA02517 Location: 537868-538660 bp Feature: domain Description: PHA0251 7 Location: 537868-538660 bp Feature: gene Location: 538701-538835 bp Feature: gene Location: 657801-658022 bp Feature: gene Location: 658101-658334 bp Feature: domain Description: PRK10597 Location: 658104-658329 bp Feature: domain Description: PRK1 0597 Location: 6581 04-658329 bp Feature: gene Location: 658413-659897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658815-659505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65881 5-659505 bp Feature: gene Location: 660054-660272 bp Feature: gene Location: 660803-661594 bp Feature: domain Description: putAbiC Location: 661289-661499 bp Feature: domain Description: putAbiC Location: 661 289-661 499 bp Feature: gene Location: 1590251-1591363 bp Feature: domain Description: FhaC Location: 1590272-1590986 bp Feature: domain Description: FhaC Location: 1 590272-1 590986 bp Feature: gene Location: 1591851-1592168 bp Feature: domain Description: PRK10276 Location: 1591857-1591971 bp Feature: domain Description: PRK1 0276 Location: 1 591 857-1 591 971 bp Feature: gene Location: 1592484-1593968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1592886-1593576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 592886-1 593576 bp Feature: gene Location: 1594388-1595065 bp Feature: gene Location: 1595077-1597206 bp Feature: domain Description: TesA Location: 1596130-1596232 bp Feature: domain Description: TesA Location: 1 5961 30-1 596232 bp Feature: domain Description: SGNH_hydrolase Location: 1596721-1597156 bp Feature: domain Description: SGNH_hydrolase Location: 1 596721 -1 5971 56 bp Feature: gene Location: 2385285-2385851 bp Feature: domain Description: Psu Location: 2385303-2385843 bp Feature: domain Description: Psu Location: 2385303-2385843 bp Feature: gene Location: 2385917-2386072 bp Feature: gene Location: 2387057-2388541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2387459-2388149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2387459-23881 49 bp Feature: gene Location: 2390427-2391689 bp Feature: domain Description: PRK09692 Location: 2390436-2391636 bp Feature: domain Description: PRK09692 Location: 2390436-2391 636 bp Feature: gene Location: 2391835-2392005 bp Feature: gene Location: 4549695-4550054 bp Feature: domain Description: HTH_XRE Location: 4549713-4549863 bp Feature: domain Description: HTH_XRE Location: 454971 3-4549863 bp Feature: gene Location: 4550144-4550596 bp Feature: domain Description: Peptidase_M78 Location: 4550303-4550573 bp Feature: domain Description: Peptidase_M78 Location: 4550303-4550573 bp Feature: gene Location: 4551491-4552978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551896-4552586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4551 896-4552586 bp Feature: gene Location: 4553056-4553295 bp Feature: gene Location: 4553298-4553624 bp Feature: domain Description: PRK10276 Location: 4553304-4553418 bp Feature: domain Description: PRK1 0276 Location: 4553304-455341 8 bp Feature: gene Location: 4772567-4772809 bp Feature: gene Location: 4772809-4773051 bp Feature: domain Description: DinI Location: 4772860-4773040 bp Feature: domain Description: DinI Location: 4772860-4773040 bp Feature: gene Location: 4773448-4774935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773853-4774543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773853-4774543 bp Feature: gene Location: 4775381-4776868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4775786-4776476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4775786-4776476 bp Feature: gene Location: 4777314-4778801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4777719-4778409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477771 9-4778409 bp Feature: gene Location: 4778881-4779300 bp Feature: domain Description: PRK10276 Location: 4778884-4779295 bp Feature: domain Description: PRK1 0276 Location: 4778884-4779295 bp Feature: gene Location: 4779303-4780568 bp Feature: domain Description: umuC Location: 4779306-4780563 bp Feature: domain Description: umuC Location: 4779306-4780563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), putAbiC (pfam16872), FhaC (COG2831), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), TesA (COG2755), SGNH_hydrolase (cl01053), Psu (pfam07455), PRK09692 (Integrase; provisional)
HTH_XRE (smart00530), Peptidase_M78 (pfam06114), DinI (pfam06183), umuC (PRK03609)

Seq: JAAXYY010000003.1 Klebsiella variicola strain FDAARGOS_625 tig00000003_pilon, whole genome shotgun sequence (25148 bp)
Overview 1 RT 1: 17754-21102 bp Neighborhood of RT #1 [17754, 21308] Peptidase_M78 RVT-GII PRK10276 Feature: gene Location: 17754-18281 bp Feature: domain Description: Peptidase_M78 Location: 17988-18258 bp Feature: domain Description: Peptidase_M78 Location: 17988-182 58 bp Feature: gene Location: 18430-18579 bp Feature: gene Location: 19175-20662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19580-20270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19580-2 02 70 bp Feature: gene Location: 20740-20979 bp Feature: gene Location: 20982-21308 bp Feature: domain Description: PRK10276 Location: 20988-21102 bp Feature: domain Description: PRK102 76 Location: 2 0988-2 1102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)