myRT

myRT report for GCA_012395285.1_ASM1239528v1

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Seq: JAAXZD010000001.1 Ochrobactrum pecoris strain DSM 23868 tig00000001:1.0-2845661.0, whole genome shotgun sequence (2853878 bp)
Overview 1 RT 1: 50288-56106 bp 2 RT 2: 1033888-1039117 bp Neighborhood of RT #1 [50288, 56348] CypX gyrB RVT-GII GIIM RRM_DbpA Neighborhood of RT #2 [1033888, 1039152] PRK03739 RVT-GII GIIM CpdA Nudix_Hydrolase_21 Feature: gene Location: 50288-51079 bp Feature: domain Description: CypX Location: 50387-51059 bp Feature: domain Description: CypX Location: 50387-51 059 bp Feature: gene Location: 51333-53717 bp Feature: domain Description: gyrB Location: 51369-53616 bp Feature: domain Description: gyrB Location: 51 369-5361 6 bp Feature: gene Location: 53881-55314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54250-54868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54250-54868 bp Feature: domain Description: GIIM Note: maturase Location: 54916-55132 bp Feature: domain Description: GIIM Note: maturase Location: 5491 6-551 32 bp Feature: gene Location: 55332-55634 bp Feature: gene Location: 55785-56348 bp Feature: domain Description: RRM_DbpA Location: 55899-56106 bp Feature: domain Description: RRM_DbpA Location: 55899-561 06 bp Feature: gene Location: 1033888-1035609 bp Feature: domain Description: PRK03739 Location: 1033957-1035601 bp Feature: domain Description: PRK03739 Location: 1 033957-1 035601 bp Feature: gene Location: 1035765-1035953 bp Feature: gene Location: 1036086-1037519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036455-1037073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036455-1 037073 bp Feature: domain Description: GIIM Note: maturase Location: 1037121-1037337 bp Feature: domain Description: GIIM Note: maturase Location: 1 0371 21 -1 037337 bp Feature: gene Location: 1037591-1038493 bp Feature: domain Description: CpdA Location: 1037597-1038464 bp Feature: domain Description: CpdA Location: 1 037597-1 038464 bp Feature: gene Location: 1038697-1039152 bp Feature: domain Description: Nudix_Hydrolase_21 Location: 1038757-1039117 bp Feature: domain Description: Nudix_Hydrolase_21 Location: 1 038757-1 0391 1 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), gyrB (TIGR01059), RVT-GII, GIIM (pfam08388), RRM_DbpA (cd12252), PRK03739 (2-isopropylmalate synthase; Validated), CpdA (COG1409), Nudix_Hydrolase_21 (cd04680)

Seq: JAAXZD010000002.1 Ochrobactrum pecoris strain DSM 23868 tig00000002:4.0-2099616.0, whole genome shotgun sequence (2105726 bp)
Overview 1 RT 1: 437602-442505 bp 2 RT 2: 502471-506034 bp 3 RT 3: 814904-817214 bp 4 RT 4: 1497195-1501266 bp Neighborhood of RT #1 [437602, 442537] HTH_32 RVT-GII KOG4768 Tra5 AcrB Neighborhood of RT #2 [502471, 506048] HTH_32 RVT-GII KOG4768 Tra5 Cfa Neighborhood of RT #3 [814904, 817214] HTH_XRE RVT-Retrons Neighborhood of RT #4 [1497195, 1501358] RVT-GII group_II_RT_mat HNHc PRK14206 COG3450 Feature: gene Location: 437602-438072 bp Feature: domain Description: HTH_32 Location: 437707-437929 bp Feature: domain Description: HTH_32 Location: 437707-43792 9 bp Feature: gene Location: 438325-438597 bp Feature: gene Location: 438691-440217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438964-439696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438964-439696 bp Feature: domain Description: KOG4768 Location: 439855-439972 bp Feature: domain Description: KOG4768 Location: 439855-439972 bp Feature: gene Location: 440381-440884 bp Feature: domain Description: Tra5 Location: 440384-440747 bp Feature: domain Description: Tra5 Location: 440384-440747 bp Feature: gene Location: 440978-442537 bp Feature: domain Description: AcrB Location: 440984-442505 bp Feature: domain Description: AcrB Location: 440984-442 505 bp Feature: gene Location: 502471-502941 bp Feature: domain Description: HTH_32 Location: 502576-502798 bp Feature: domain Description: HTH_32 Location: 502 576-502 798 bp Feature: gene Location: 503194-503466 bp Feature: gene Location: 503560-505086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503833-504565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503833-504565 bp Feature: domain Description: KOG4768 Location: 504724-504841 bp Feature: domain Description: KOG4768 Location: 50472 4-504841 bp Feature: gene Location: 505250-505702 bp Feature: domain Description: Tra5 Location: 505253-505616 bp Feature: domain Description: Tra5 Location: 5052 53-505616 bp Feature: gene Location: 505755-506048 bp Feature: domain Description: Cfa Location: 505776-506034 bp Feature: domain Description: Cfa Location: 505776-506034 bp Feature: gene Location: 814904-815083 bp Feature: gene Location: 815108-815419 bp Feature: domain Description: HTH_XRE Location: 815120-815282 bp Feature: domain Description: HTH_XRE Location: 81512 0-8152 82 bp Feature: gene Location: 815422-815913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 815569-815839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 815569-815839 bp Feature: gene Location: 815994-816329 bp Feature: gene Location: 816546-817214 bp Feature: gene Location: 1497195-1497380 bp Feature: gene Location: 1498050-1498229 bp Feature: gene Location: 1498240-1499787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498318-1499119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498318-1499119 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1499338-1499470 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1499338-1499470 bp Feature: domain Description: HNHc Note: nucleases Location: 1499665-1499743 bp Feature: domain Description: HNHc Note: nucleases Location: 1499665-1499743 bp Feature: gene Location: 1500193-1500582 bp Feature: domain Description: PRK14206 Location: 1500208-1500523 bp Feature: domain Description: PRK142 06 Location: 15002 08-150052 3 bp Feature: gene Location: 1500846-1501358 bp Feature: domain Description: COG3450 Location: 1500954-1501266 bp Feature: domain Description: COG3450 Location: 1500954-15012 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Tra5 (COG2801), AcrB (COG0841), Cfa (COG2230), HTH_XRE (smart00530), RVT-Retrons, group_II_RT_mat (TIGR04416), HNHc (smart00507)
PRK14206 (fluoride efflux transporter CrcB), COG3450 (Predicted enzyme of the cupin superfamily )