myRT

myRT report for GCA_012396395.1_ASM1239639v1

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Seq: JAAXPI010000010.1 Actinomadura latina strain ATCC BAA-277 W7474_10, whole genome shotgun sequence (151406 bp)
Overview 1 RT 1: 92617-97202 bp 2 RT 2: 137084-143983 bp Neighborhood of RT #1 [92617, 97843] Aes HATPase_RsbW-like RVT_N RVT-GII GIIM HTH_31 Neighborhood of RT #2 [137084, 144021] PRK09369 RVT-GII GIIM esterase_phb esterase_phb KOG3010 Glyoxalase_6 Feature: gene Location: 92617-93486 bp Feature: domain Description: Aes Location: 92803-93121 bp Feature: domain Description: Aes Location: 92803-931 21 bp Feature: gene Location: 93555-93872 bp Feature: domain Description: HATPase_RsbW-like Location: 93651-93858 bp Feature: domain Description: HATPase_RsbW-like Location: 93651 -93858 bp Feature: gene Location: 93869-95626 bp Feature: domain Description: RVT_N Location: 93902-94139 bp Feature: domain Description: RVT_N Location: 93902-941 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94199-94865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 99-94865 bp Feature: domain Description: GIIM Note: maturase Location: 94916-95150 bp Feature: domain Description: GIIM Note: maturase Location: 9491 6-951 50 bp Feature: gene Location: 96473-96790 bp Feature: gene Location: 96974-97843 bp Feature: domain Description: HTH_31 Location: 97025-97202 bp Feature: domain Description: HTH_31 Location: 97025-97202 bp Feature: gene Location: 137084-137296 bp Feature: gene Location: 137441-138742 bp Feature: domain Description: PRK09369 Location: 137459-138725 bp Feature: domain Description: PRK09369 Location: 1 37459-1 38725 bp Feature: gene Location: 138850-140238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139216-139840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3921 6-1 39840 bp Feature: domain Description: GIIM Note: maturase Location: 139933-140143 bp Feature: domain Description: GIIM Note: maturase Location: 1 39933-1 401 43 bp Feature: gene Location: 141317-142576 bp Feature: domain Description: esterase_phb Location: 141443-141785 bp Feature: domain Description: esterase_phb Location: 1 41 443-1 41 785 bp Feature: domain Description: esterase_phb Location: 142049-142271 bp Feature: domain Description: esterase_phb Location: 1 42049-1 42271 bp Feature: gene Location: 143050-144021 bp Feature: domain Description: KOG3010 Location: 143086-143545 bp Feature: domain Description: KOG301 0 Location: 1 43086-1 43545 bp Feature: domain Description: Glyoxalase_6 Location: 143851-143983 bp Feature: domain Description: Glyoxalase_6 Location: 1 43851 -1 43983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), HATPase_RsbW-like (cd16936), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560), PRK09369 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated), esterase_phb (TIGR01840), KOG3010 (KOG3010, Methyltransferase ), Glyoxalase_6 (pfam18029)

Seq: JAAXPI010000163.1 Actinomadura latina strain ATCC BAA-277 W7474_163, whole genome shotgun sequence (2545 bp)
Overview 1 RT 1: 2-2544 bp Neighborhood of RT #1 [2, 2544] RVT_N RVT-GII Feature: gene Location: 2-181 bp Feature: gene Location: 760-2283 bp Feature: domain Description: RVT_N Location: 847-1084 bp Feature: domain Description: RVT_N Location: 847-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144-1801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144-1801 bp Feature: gene Location: 2362-2544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAXPI010000004.1 Actinomadura latina strain ATCC BAA-277 W7474_4, whole genome shotgun sequence (210778 bp)
Overview 1 RT 1: 106610-111966 bp Neighborhood of RT #1 [106610, 111966] excise PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 106610-106813 bp Feature: domain Description: excise Location: 106661-106802 bp Feature: domain Description: excise Location: 106661-106802 bp Feature: gene Location: 106883-107461 bp Feature: domain Description: PHA02517 Location: 106970-107414 bp Feature: domain Description: PHA02517 Location: 106970-107414 bp Feature: gene Location: 107492-108892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107756-108443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107756-108443 bp Feature: domain Description: GIIM Note: maturase Location: 108518-108737 bp Feature: domain Description: GIIM Note: maturase Location: 108518-10873 7 bp Feature: gene Location: 109512-109994 bp Feature: domain Description: PHA02517 Location: 109587-109920 bp Feature: domain Description: PHA02517 Location: 109587-109920 bp Feature: gene Location: 111346-111966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT excise (TIGR01764), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAAXPI010000005.1 Actinomadura latina strain ATCC BAA-277 W7474_5, whole genome shotgun sequence (186354 bp)
Overview 1 RT 1: 3520-8341 bp Neighborhood of RT #1 [3520, 8341] CRISPR_Cas2 Cas_Cas1 RVT-CRISPR ThiF Feature: gene Location: 3520-3801 bp Feature: domain Description: CRISPR_Cas2 Location: 3544-3742 bp Feature: domain Description: CRISPR_Cas2 Location: 354 4 -374 2 bp Feature: gene Location: 3806-4819 bp Feature: domain Description: Cas_Cas1 Location: 3836-4676 bp Feature: domain Description: Cas_Cas1 Location: 3836-4 676 bp Feature: gene Location: 4821-5834 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5181-5772 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5181-5772 bp Feature: gene Location: 6924-7829 bp Feature: domain Description: ThiF Location: 6966-7740 bp Feature: domain Description: ThiF Location: 6966-774 0 bp Feature: gene Location: 7817-8341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), Cas_Cas1 (pfam01867), RVT-CRISPR, ThiF (pfam00899)

Seq: JAAXPI010000051.1 Actinomadura latina strain ATCC BAA-277 W7474_51, whole genome shotgun sequence (54261 bp)
Overview 1 RT 1: 12271-16932 bp 2 RT 2: 43531-50493 bp Neighborhood of RT #1 [12271, 16991] SAVED RVT-CRISPR Cas_Cas1 CRISPR_Cas2 Neighborhood of RT #2 [43531, 51191] HTH_Tnp_4 DDE_Tnp_4 DDE_Tnp_1_4 RVT-GII GIIM MoxR Feature: gene Location: 12271-12441 bp Feature: gene Location: 12440-12991 bp Feature: domain Description: SAVED Location: 12836-12965 bp Feature: domain Description: SAVED Location: 12836-12965 bp Feature: gene Location: 14787-15680 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15027-15618 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15 027-15 618 bp Feature: gene Location: 15682-16695 bp Feature: domain Description: Cas_Cas1 Location: 15712-16549 bp Feature: domain Description: Cas_Cas1 Location: 15 712-165 49 bp Feature: gene Location: 16701-16991 bp Feature: domain Description: CRISPR_Cas2 Location: 16734-16932 bp Feature: domain Description: CRISPR_Cas2 Location: 16734-16932 bp Feature: gene Location: 43531-44124 bp Feature: domain Description: HTH_Tnp_4 Location: 43639-43783 bp Feature: domain Description: HTH_Tnp_4 Location: 43639-43783 bp Feature: domain Description: DDE_Tnp_4 Location: 43843-44083 bp Feature: domain Description: DDE_Tnp_4 Location: 43843-44083 bp Feature: gene Location: 44215-45645 bp Feature: domain Description: DDE_Tnp_1_4 Location: 44239-45631 bp Feature: domain Description: DDE_Tnp_1_4 Location: 44239-45 631 bp Feature: gene Location: 46159-47430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46375-47044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46375 -47044 bp Feature: domain Description: GIIM Note: maturase Location: 47122-47341 bp Feature: domain Description: GIIM Note: maturase Location: 47122-47341 bp Feature: gene Location: 48396-49805 bp Feature: gene Location: 49896-51191 bp Feature: domain Description: MoxR Location: 50034-50493 bp Feature: domain Description: MoxR Location: 5 0034-5 0493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SAVED (pfam18145), RVT-CRISPR, Cas_Cas1 (pfam01867), CRISPR_Cas2 (pfam09827), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), MoxR (COG0714)

Seq: JAAXPI010000007.1 Actinomadura latina strain ATCC BAA-277 W7474_7, whole genome shotgun sequence (181482 bp)
Overview 1 RT 1: 116326-120096 bp Neighborhood of RT #1 [116326, 120113] INT_ICEBs1_C_like RVT-GII INT_ICEBs1_C_like StbC COG4113 Feature: gene Location: 116326-116625 bp Feature: gene Location: 117099-117413 bp Feature: domain Description: INT_ICEBs1_C_like Location: 117129-117276 bp Feature: domain Description: INT_ICEBs1_C_like Location: 117129-117276 bp Feature: gene Location: 117519-118778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117666-118002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176 6 6 -118002 bp Feature: domain Description: INT_ICEBs1_C_like Location: 118530-118773 bp Feature: domain Description: INT_ICEBs1_C_like Location: 118530-118773 bp Feature: gene Location: 119479-119703 bp Feature: domain Description: StbC Location: 119482-119611 bp Feature: domain Description: StbC Location: 119482-1196 11 bp Feature: gene Location: 119700-120113 bp Feature: domain Description: COG4113 Location: 119709-120096 bp Feature: domain Description: COG4113 Location: 119709-120096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-GII, StbC (COG4691), COG4113 (Predicted nucleic acid-binding protein, contains PIN domain )