myRT

myRT report for GCA_012514215.1_ASM1251421v1

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Seq: JAAZAS010000807.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 212051_AS06, whole genome shotgun sequence (2293 bp)
Overview 1 RT 1: 210-2195 bp Neighborhood of RT #1 [210, 2215] RVT-DGRs HTH_17 COG3291 Feature: gene Location: 210-1298 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 420-1020 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 420-1 020 bp Feature: gene Location: 1378-1599 bp Feature: domain Description: HTH_17 Location: 1429-1576 bp Feature: domain Description: HTH_1 7 Location: 1 429-1 576 bp Feature: gene Location: 1625-2215 bp Feature: domain Description: COG3291 Location: 1856-2195 bp Feature: domain Description: COG3291 Location: 1 856-21 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_17 (pfam12728), COG3291 (PKD repeat )

Seq: JAAZAS010000815.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 222140_AS06, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 361-1921 bp Neighborhood of RT #1 [361, 2133] Hrd Avd_like RVT-DGRs Feature: gene Location: 361-804 bp Feature: domain Description: Hrd Location: 571-796 bp Feature: domain Description: Hrd Location: 571-796 bp Feature: gene Location: 797-1135 bp Feature: domain Description: Avd_like Location: 821-1124 bp Feature: domain Description: Avd_like Location: 82 1-112 4 bp Feature: gene Location: 1258-2133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1333-1921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1333-192 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hrd (LOAD_Hrd), Avd_like (cd16376), RVT-DGRs

Seq: JAAZAS010000748.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 292338_AS06, whole genome shotgun sequence (1612 bp)
Overview 1 RT 1: 34-1609 bp Neighborhood of RT #1 [34, 1609] RVT-GII GIIM Feature: gene Location: 34-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1174 bp Feature: domain Description: GIIM Note: maturase Location: 940-1174 bp Feature: gene Location: 1412-1609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAZAS010000694.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 347248_AS06, whole genome shotgun sequence (3506 bp)
Overview 1 RT 1: 2-2165 bp Neighborhood of RT #1 [2, 2179] S2P-M50 RVT-DGRs Avd_like Feature: gene Location: 2-157 bp Feature: gene Location: 173-487 bp Feature: domain Description: S2P-M50 Location: 197-404 bp Feature: domain Description: S2P-M50 Location: 197-4 04 bp Feature: gene Location: 471-1454 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 615-1218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 615-1218 bp Feature: gene Location: 1645-1800 bp Feature: gene Location: 1829-2179 bp Feature: domain Description: Avd_like Location: 1859-2165 bp Feature: domain Description: Avd_like Location: 1859-2165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50 (cl10020), RVT-DGRs, Avd_like (cd16376)

Seq: JAAZAS010000029.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 39239_AS06, whole genome shotgun sequence (8236 bp)
Overview 1 RT 1: 3-3750 bp Neighborhood of RT #1 [3, 3750] RVT-Retrons ABC_ATPase Feature: gene Location: 3-740 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-5 19 bp Feature: gene Location: 905-3499 bp Feature: domain Description: ABC_ATPase Location: 1193-3041 bp Feature: domain Description: ABC_ATPase Location: 1193-3041 bp Feature: gene Location: 3520-3750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ABC_ATPase (pfam09818)

Seq: JAAZAS010000697.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 531377_AS06, whole genome shotgun sequence (30243 bp)
Overview 1 RT 1: 9234-21363 bp Neighborhood of RT #1 [9234, 21554] HTH_ARSR PRK05399 PHA03411 COG4646 RVT-GII Intron_maturas2 HNHc Helicase_C DUF3846 Feature: gene Location: 9234-9572 bp Feature: domain Description: HTH_ARSR Location: 9255-9471 bp Feature: domain Description: HTH_ARSR Location: 9255-9471 bp Feature: gene Location: 9712-17166 bp Feature: domain Description: PRK05399 Location: 11983-12208 bp Feature: domain Description: PRK05399 Location: 11983-12208 bp Feature: domain Description: PHA03411 Location: 14065-14302 bp Feature: domain Description: PHA03411 Location: 1406 5-14302 bp Feature: domain Description: COG4646 Location: 14617-17074 bp Feature: domain Description: COG46 46 Location: 146 17-17074 bp Feature: gene Location: 17667-19448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17928-18720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17928-18720 bp Feature: domain Description: Intron_maturas2 Location: 18825-19056 bp Feature: domain Description: Intron_maturas2 Location: 18825-19056 bp Feature: domain Description: HNHc Note: nucleases Location: 19245-19407 bp Feature: domain Description: HNHc Note: nucleases Location: 19245-19407 bp Feature: gene Location: 19471-21069 bp Feature: domain Description: Helicase_C Location: 19891-20107 bp Feature: domain Description: Helicase_C Location: 19891-20107 bp Feature: gene Location: 21069-21554 bp Feature: domain Description: DUF3846 Location: 21093-21363 bp Feature: domain Description: DUF3846 Location: 21093-2136 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), PRK05399 (DNA mismatch repair protein MutS; Provisional), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Helicase_C (pfam00271), DUF3846 (pfam12957)

Seq: JAAZAS010000377.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 541772_AS06, whole genome shotgun sequence (5049 bp)
Overview 1 RT 1: 1886-5034 bp Neighborhood of RT #1 [1886, 5048] GIIM RVT-GII RVT-GII InsE HTH_21 rve RVT-GII Feature: gene Location: 1886-2242 bp Feature: gene Location: 2303-2641 bp Feature: domain Description: GIIM Note: maturase Location: 2333-2558 bp Feature: domain Description: GIIM Note: maturase Location: 2333-2558 bp Feature: gene Location: 2683-2877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689-2869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689-2869 bp Feature: gene Location: 2936-3076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3068 bp Feature: gene Location: 3185-3496 bp Feature: domain Description: InsE Location: 3197-3455 bp Feature: domain Description: InsE Location: 3197 -3455 bp Feature: gene Location: 3775-4221 bp Feature: domain Description: HTH_21 Location: 3790-3868 bp Feature: domain Description: HTH_21 Location: 37 90-3868 bp Feature: domain Description: rve Location: 3913-4192 bp Feature: domain Description: rve Location: 3913-4192 bp Feature: gene Location: 4336-4599 bp Feature: gene Location: 4851-5048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854-5034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854-5034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, InsE (COG2963), HTH_21 (pfam13276), rve (pfam00665)

Seq: JAAZAS010000533.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 564871_AS06, whole genome shotgun sequence (1927 bp)
Overview 1 RT 1: 3-1736 bp Neighborhood of RT #1 [3, 1792] sbcd RVT-GII GIIM Feature: gene Location: 3-362 bp Feature: domain Description: sbcd Location: 12-348 bp Feature: domain Description: sbcd Location: 12-348 bp Feature: gene Location: 497-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1508 -1736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sbcd (TIGR00619), RVT-GII, GIIM (pfam08388)

Seq: JAAZAS010000516.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 631368_AS06, whole genome shotgun sequence (3699 bp)
Overview 1 RT 1: 1-2787 bp Neighborhood of RT #1 [1, 2858] DDE_Tnp_IS66_C RVT-GII GIIM ParE_toxin PhdYeFM_antitox Feature: gene Location: 1-225 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43-163 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43-163 bp Feature: gene Location: 745-2070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000-169 3 bp Feature: domain Description: GIIM Note: maturase Location: 1771-1981 bp Feature: domain Description: GIIM Note: maturase Location: 1771-19 81 bp Feature: gene Location: 2254-2580 bp Feature: domain Description: ParE_toxin Location: 2278-2548 bp Feature: domain Description: ParE_toxin Location: 2278-2548 bp Feature: gene Location: 2577-2858 bp Feature: domain Description: PhdYeFM_antitox Location: 2592-2787 bp Feature: domain Description: PhdYeFM_antitox Location: 259 2-2787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), ParE_toxin (pfam05016), PhdYeFM_antitox (pfam02604)

Seq: JAAZAS010000514.1 Clostridiaceae bacterium isolate AS06rmzACSIP_448 640150_AS06, whole genome shotgun sequence (4220 bp)
Overview 1 RT 1: 2398-3714 bp Neighborhood of RT #1 [2398, 4217] RVT-GII Feature: gene Location: 2398-2601 bp Feature: gene Location: 2601-2825 bp Feature: gene Location: 2904-4217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120-3714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120-3714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII