myRT

myRT report for GCA_012517535.1_ASM1251753v1

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Seq: JAAYUU010000189.1 Deltaproteobacteria bacterium isolate AS27yjCOA_184 139712_AS27, whole genome shotgun sequence (44613 bp)
Overview 1 RT 1: 5062-9135 bp Neighborhood of RT #1 [5062, 9135] TPR_YbbN TPR TPR MTAN RVT-Retrons Feature: gene Location: 5062-6444 bp Feature: domain Description: TPR_YbbN Location: 5140-5260 bp Feature: domain Description: TPR_YbbN Location: 51 40-5260 bp Feature: domain Description: TPR Location: 5605-5896 bp Feature: domain Description: TPR Location: 5605-5896 bp Feature: domain Description: TPR Location: 6064-6394 bp Feature: domain Description: TPR Location: 6064-6394 bp Feature: gene Location: 6444-7202 bp Feature: domain Description: MTAN Location: 6525-7167 bp Feature: domain Description: MTAN Location: 6525-71 67 bp Feature: gene Location: 7190-8365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7565-8120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7565-81 20 bp Feature: gene Location: 8554-8745 bp Feature: gene Location: 8962-9135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_YbbN (sd00008), TPR (smart00028), MTAN (cd09008), RVT-Retrons

Seq: JAAYUU010000200.1 Deltaproteobacteria bacterium isolate AS27yjCOA_184 154060_AS27, whole genome shotgun sequence (2753 bp)
Overview 1 RT 1: 1-2469 bp Neighborhood of RT #1 [1, 2469] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-144 bp Feature: gene Location: 248-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 -1310 bp Feature: domain Description: Intron_maturas2 Location: 1463-1676 bp Feature: domain Description: Intron_maturas2 Location: 1463-1676 bp Feature: domain Description: HNHc Note: nucleases Location: 1859-2003 bp Feature: domain Description: HNHc Note: nucleases Location: 1859-2 003 bp Feature: gene Location: 2209-2469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAYUU010000223.1 Deltaproteobacteria bacterium isolate AS27yjCOA_184 188898_AS27, whole genome shotgun sequence (7208 bp)
Overview 1 RT 1: 4121-6975 bp Neighborhood of RT #1 [4121, 6975] RVT_N RVT-GII GIIM Feature: gene Location: 4121-4324 bp Feature: gene Location: 4442-4585 bp Feature: RT Description: RVT_N Location: 4490-4580 bp Feature: RT Description: RVT_N Location: 4490-4580 bp Feature: gene Location: 4643-5311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4778-5201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4778-5201 bp Feature: gene Location: 5358-5918 bp Feature: domain Description: GIIM Note: maturase Location: 5460-5688 bp Feature: domain Description: GIIM Note: maturase Location: 5460-5688 bp Feature: gene Location: 6160-6975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAYUU010000131.1 Deltaproteobacteria bacterium isolate AS27yjCOA_184 83971_AS27, whole genome shotgun sequence (3897 bp)
Overview 1 RT 1: 323-3440 bp Neighborhood of RT #1 [323, 3440] RVT-GII Feature: gene Location: 323-1495 bp Feature: gene Location: 1630-1947 bp Feature: gene Location: 2173-2910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395-2785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395-2785 bp Feature: gene Location: 2938-3117 bp Feature: gene Location: 3189-3440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAYUU010000137.1 Deltaproteobacteria bacterium isolate AS27yjCOA_184 89287_AS27, whole genome shotgun sequence (40119 bp)
Overview 1 RT 1: 38243-40051 bp Neighborhood of RT #1 [38243, 40051] HicA_toxin HicB RVT-GII Feature: gene Location: 38243-38425 bp Feature: domain Description: HicA_toxin Location: 38258-38417 bp Feature: domain Description: HicA_toxin Location: 3825 8-38417 bp Feature: gene Location: 38422-38616 bp Feature: domain Description: HicB Location: 38446-38566 bp Feature: domain Description: HicB Location: 38446-385 66 bp Feature: gene Location: 38713-39723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38968-39538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38968-395 38 bp Feature: gene Location: 39731-40051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicA_toxin (pfam07927), HicB (pfam05534), RVT-GII