myRT

myRT report for GCA_012524165.1_ASM1252416v1

Download annotations/find similar RTs

Seq: JABACJ010000173.1 Faecalicatena sp. AGMB00832 NODE_373, whole genome shotgun sequence (5719 bp)
Overview 1 RT 1: 935-4672 bp Neighborhood of RT #1 [935, 4731] TnpV RVT-GII GIIM SoxR HTH_Tnp_1 Feature: gene Location: 935-1114 bp Feature: gene Location: 1445-1825 bp Feature: domain Description: TnpV Location: 1484-1817 bp Feature: domain Description: TnpV Location: 1 484-1 81 7 bp Feature: gene Location: 2373-3626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2577-3192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2577-31 92 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3480 bp Feature: domain Description: GIIM Note: maturase Location: 3246-3480 bp Feature: gene Location: 3978-4358 bp Feature: domain Description: SoxR Location: 3990-4326 bp Feature: domain Description: SoxR Location: 3990-4326 bp Feature: gene Location: 4432-4731 bp Feature: domain Description: HTH_Tnp_1 Location: 4447-4672 bp Feature: domain Description: HTH_Tnp_1 Location: 4447-4672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-GII, GIIM (pfam08388), SoxR (TIGR01950), HTH_Tnp_1 (pfam01527)

Seq: JABACJ010000192.1 Faecalicatena sp. AGMB00832 NODE_444, whole genome shotgun sequence (5137 bp)
Overview 1 RT 1: 2214-5056 bp Neighborhood of RT #1 [2214, 5056] RVT_N RVT-GII GIIM Feature: gene Location: 2214-2711 bp Feature: gene Location: 2781-2924 bp Feature: gene Location: 3164-4702 bp Feature: RT Description: RVT_N Location: 3218-3461 bp Feature: RT Description: RVT_N Location: 32 18-3461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3518-4178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3518-4178 bp Feature: domain Description: GIIM Note: maturase Location: 4241-4475 bp Feature: domain Description: GIIM Note: maturase Location: 42 41-4475 bp Feature: gene Location: 4826-5056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)